Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 5YH    

Bonds between two atoms of the molecule

Total Number of Bonds: 45


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O09 C08 O C doub 1.22 N N
2 N07 C08 N C sing 1.34 N N
3 N07 C06 N C sing 1.47 N N
4 C08 N04 C N sing 1.34 N N
5 C06 C05 C C sing 1.54 N N
6 N04 C05 N C sing 1.47 N N
7 N04 C03 N C sing 1.47 N N
8 C03 C02 C C sing 1.53 N N
9 C02 O01 C O sing 1.43 N N
10 C02 C10 C C sing 1.53 N N
11 C10 N11 C N sing 1.46 N N
12 N11 C12 N C sing 1.38 N Y
13 N11 C20 N C sing 1.39 N Y
14 C13 C12 C C doub 1.39 N Y
15 C13 C14 C C sing 1.38 N Y
16 C21 C20 C C sing 1.39 N Y
17 C21 C22 C C doub 1.38 N Y
18 C12 C18 C C sing 1.4 N Y
19 C20 C19 C C doub 1.4 N Y
20 C14 C15 C C doub 1.39 N Y
21 C22 C23 C C sing 1.39 N Y
22 C18 C19 C C sing 1.47 N Y
23 C18 C17 C C doub 1.39 N Y
24 C19 C24 C C sing 1.39 N Y
25 C15 C17 C C sing 1.38 N Y
26 C15 F16 C F sing 1.35 N N
27 C23 C24 C C doub 1.38 N Y
28 C23 F25 C F sing 1.35 N N
29 C10 H1 C H sing 1.09 N N
30 C10 H2 C H sing 1.09 N N
31 C13 H3 C H sing 1.08 N N
32 C17 H4 C H sing 1.08 N N
33 C21 H5 C H sing 1.08 N N
34 C22 H6 C H sing 1.08 N N
35 C24 H7 C H sing 1.08 N N
36 C02 H8 C H sing 1.09 N N
37 C03 H9 C H sing 1.09 N N
38 C03 H10 C H sing 1.09 N N
39 C05 H11 C H sing 1.09 N N
40 C05 H12 C H sing 1.09 N N
41 C06 H13 C H sing 1.09 N N
42 C14 H14 C H sing 1.08 N N
43 O01 H15 O H sing 0.97 N N
44 C06 H16 C H sing 1.09 N N
45 N07 H17 N H sing 0.97 N N