Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 6D3    

Bonds between two atoms of the molecule

Total Number of Bonds: 76


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N5 C12 N C sing 1.38 N N
2 C12 C11 C C doub 1.41 N Y
3 C12 N7 C N sing 1.33 N Y
4 N4 C11 N C sing 1.35 N Y
5 N4 C10 N C doub 1.3 N Y
6 N11 C21 N C sing 1.47 N N
7 C11 C13 C C sing 1.41 N Y
8 N7 C14 N C doub 1.32 N Y
9 C10 N3 C N sing 1.36 N Y
10 C21 C20 C C sing 1.53 N N
11 C21 C22 C C sing 1.51 N N
12 C14 N6 C N sing 1.32 N Y
13 C13 N3 C N sing 1.37 N Y
14 C13 N6 C N doub 1.33 N Y
15 O6 C22 O C doub 1.21 N N
16 N3 C7 N C sing 1.46 N N
17 C20 C19 C C sing 1.51 N N
18 C22 O7 C O sing 1.34 N N
19 C18 C19 C C doub 1.35 N Y
20 C18 N8 C N sing 1.35 N Y
21 C19 N9 C N sing 1.34 N Y
22 C7 C8 C C sing 1.55 N N
23 C7 O2 C O sing 1.44 N N
24 C8 O3 C O sing 1.43 N N
25 C8 C9 C C sing 1.55 N N
26 N8 C17 N C sing 1.47 N N
27 N8 N10 N N sing 1.29 N Y
28 C17 C16 C C sing 1.53 N N
29 O2 C6 O C sing 1.44 N N
30 N9 N10 N N doub 1.29 N Y
31 C16 C15 C C sing 1.53 N N
32 C9 C6 C C sing 1.54 N N
33 C9 O4 C O sing 1.43 N N
34 C5 C6 C C sing 1.53 N N
35 C5 N2 C N sing 1.47 N N
36 C15 N2 C N sing 1.47 N N
37 N2 C4 N C sing 1.47 N N
38 C4 C3 C C sing 1.53 N N
39 C3 C2 C C sing 1.53 N N
40 N1 C2 N C sing 1.47 N N
41 C2 C1 C C sing 1.51 N N
42 O1 C1 O C doub 1.21 N N
43 C1 O5 C O sing 1.34 N N
44 C2 H1 C H sing 1.09 N N
45 N1 H2 N H sing 1.01 N N
46 N1 H3 N H sing 1.01 N N
47 C3 H5 C H sing 1.09 N N
48 C3 H6 C H sing 1.09 N N
49 C4 H7 C H sing 1.09 N N
50 C4 H8 C H sing 1.09 N N
51 C5 H10 C H sing 1.09 N N
52 C5 H11 C H sing 1.09 N N
53 C6 H12 C H sing 1.09 N N
54 C7 H13 C H sing 1.09 N N
55 C8 H14 C H sing 1.09 N N
56 O3 H15 O H sing 0.97 N N
57 C9 H16 C H sing 1.09 N N
58 O4 H17 O H sing 0.97 N N
59 C10 H18 C H sing 1.08 N N
60 N5 H19 N H sing 0.97 N N
61 N5 H20 N H sing 0.97 N N
62 C14 H21 C H sing 1.08 N N
63 O5 H22 O H sing 0.97 N N
64 C15 H23 C H sing 1.09 N N
65 C15 H24 C H sing 1.09 N N
66 C16 H25 C H sing 1.09 N N
67 C16 H26 C H sing 1.09 N N
68 C17 H27 C H sing 1.09 N N
69 C17 H28 C H sing 1.09 N N
70 C18 H29 C H sing 1.08 N N
71 C20 H30 C H sing 1.09 N N
72 C20 H31 C H sing 1.09 N N
73 C21 H32 C H sing 1.09 N N
74 N11 H33 N H sing 1.01 N N
75 N11 H34 N H sing 1.01 N N
76 O7 H36 O H sing 0.97 N N