Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 6QA    

Bonds between two atoms of the molecule

Total Number of Bonds: 121


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O30 P29 O P doub 1.48 N N
2 P29 O54 P O sing 1.61 N N
3 P29 O28 P O sing 1.61 N N
4 P29 O31 P O sing 1.61 N N
5 O34 C33 O C sing 1.44 N N
6 O34 C35 O C sing 1.44 N N
7 C33 C48 C C sing 1.55 N N
8 C33 C32 C C sing 1.53 N N
9 O49 C48 O C sing 1.43 N N
10 O49 P50 O P sing 1.61 N N
11 O28 P26 O P sing 1.61 N N
12 C35 C46 C C sing 1.55 N N
13 C35 N36 C N sing 1.47 N N
14 O31 C32 O C sing 1.43 N N
15 N41 C42 N C doub 1.32 N Y
16 N41 C40 N C sing 1.33 N Y
17 C42 N43 C N sing 1.32 N Y
18 O53 P50 O P doub 1.48 N N
19 O47 C46 O C sing 1.43 N N
20 O55 P26 O P doub 1.48 N N
21 O51 P50 O P sing 1.61 N N
22 C48 C46 C C sing 1.54 N N
23 P50 O52 P O sing 1.61 N N
24 C40 N36 C N sing 1.37 N Y
25 C40 C39 C C doub 1.41 N Y
26 N36 C37 N C sing 1.36 N Y
27 P26 O25 P O sing 1.61 N N
28 P26 O27 P O sing 1.61 N N
29 N43 C44 N C doub 1.33 N Y
30 C37 N38 C N doub 1.3 N Y
31 C39 C44 C C sing 1.41 N Y
32 C39 N38 C N sing 1.35 N Y
33 C44 N45 C N sing 1.38 N N
34 O25 C24 O C sing 1.43 N N
35 C24 C21 C C sing 1.53 N N
36 C22 C21 C C sing 1.53 N N
37 O56 C18 O C doub 1.21 N N
38 C21 C19 C C sing 1.53 N N
39 C21 C23 C C sing 1.53 N N
40 C19 C18 C C sing 1.51 N N
41 C19 O20 C O sing 1.43 N N
42 C18 N17 C N sing 1.35 N N
43 N17 C16 N C sing 1.46 N N
44 C16 C15 C C sing 1.53 N N
45 C15 C14 C C sing 1.51 N N
46 C11 S10 C S sing 1.81 N N
47 C11 C12 C C sing 1.53 N N
48 C14 O57 C O doub 1.21 N N
49 C14 N13 C N sing 1.35 N N
50 N13 C12 N C sing 1.46 N N
51 S10 C09 S C sing 1.71 N N
52 C09 C08 C C sing 1.51 N N
53 C09 O58 C O doub 1.21 N N
54 C08 C07 C C sing 1.53 N N
55 C07 C06 C C sing 1.53 N N
56 C06 C05 C C sing 1.53 N N
57 C05 O04 C O sing 1.43 N N
58 O04 C03 O C sing 1.43 N N
59 O64 C62 O C sing 1.43 N N
60 C63 C02 C C sing 1.53 N N
61 C63 C62 C C sing 1.53 N N
62 C03 C02 C C sing 1.53 N N
63 C03 O59 C O sing 1.43 N N
64 C60 C62 C C sing 1.53 N N
65 C60 O59 C O sing 1.43 N N
66 C60 C61 C C sing 1.53 N N
67 C02 O01 C O sing 1.43 N N
68 O01 H1 O H sing 0.97 N N
69 C02 H2 C H sing 1.09 N N
70 C03 H3 C H sing 1.09 N N
71 C05 H4 C H sing 1.09 N N
72 C05 H5 C H sing 1.09 N N
73 C06 H6 C H sing 1.09 N N
74 C06 H7 C H sing 1.09 N N
75 C07 H8 C H sing 1.09 N N
76 C07 H9 C H sing 1.09 N N
77 C08 H10 C H sing 1.09 N N
78 C08 H11 C H sing 1.09 N N
79 C11 H12 C H sing 1.09 N N
80 C11 H13 C H sing 1.09 N N
81 C12 H14 C H sing 1.09 N N
82 C12 H15 C H sing 1.09 N N
83 N13 H16 N H sing 0.97 N N
84 C15 H17 C H sing 1.09 N N
85 C15 H18 C H sing 1.09 N N
86 C16 H19 C H sing 1.09 N N
87 C16 H20 C H sing 1.09 N N
88 N17 H21 N H sing 0.97 N N
89 C19 H22 C H sing 1.09 N N
90 O20 H23 O H sing 0.97 N N
91 C22 H24 C H sing 1.09 N N
92 C22 H25 C H sing 1.09 N N
93 C22 H26 C H sing 1.09 N N
94 C23 H27 C H sing 1.09 N N
95 C23 H28 C H sing 1.09 N N
96 C23 H29 C H sing 1.09 N N
97 C24 H30 C H sing 1.09 N N
98 C24 H31 C H sing 1.09 N N
99 O27 H32 O H sing 0.97 N N
100 C32 H33 C H sing 1.09 N N
101 C32 H34 C H sing 1.09 N N
102 C33 H35 C H sing 1.09 N N
103 C35 H36 C H sing 1.09 N N
104 C37 H37 C H sing 1.08 N N
105 C42 H38 C H sing 1.08 N N
106 N45 H39 N H sing 0.97 N N
107 N45 H40 N H sing 0.97 N N
108 C46 H41 C H sing 1.09 N N
109 O47 H42 O H sing 0.97 N N
110 C48 H43 C H sing 1.09 N N
111 O51 H44 O H sing 0.97 N N
112 O52 H45 O H sing 0.97 N N
113 O54 H46 O H sing 0.97 N N
114 C60 H47 C H sing 1.09 N N
115 C61 H48 C H sing 1.09 N N
116 C61 H49 C H sing 1.09 N N
117 C61 H50 C H sing 1.09 N N
118 C62 H51 C H sing 1.09 N N
119 C63 H52 C H sing 1.09 N N
120 C63 H53 C H sing 1.09 N N
121 O64 H54 O H sing 0.97 N N