Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 6SI    

Bonds between two atoms of the molecule

Total Number of Bonds: 50


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N2 N1 N N sing 1.45 N N
2 N2 C N C sing 1.47 N N
3 N1 N N N sing 1.45 N N
4 C C1 C C sing 1.51 N N
5 C1 O C O doub 1.21 N N
6 C1 N3 C N sing 1.35 N N
7 C2 N3 C N sing 1.47 N N
8 C2 C3 C C sing 1.53 N N
9 N3 C13 N C sing 1.47 N N
10 C3 C4 C C sing 1.52 N N
11 C13 C12 C C sing 1.51 N N
12 C4 C12 C C doub 1.34 N Y
13 C4 N4 C N sing 1.33 N Y
14 C12 S1 C S sing 1.76 N Y
15 N4 C5 N C doub 1.29 N Y
16 S1 C5 S C sing 1.71 N Y
17 C5 N5 C N sing 1.39 N N
18 N5 C6 N C sing 1.35 N N
19 C6 O1 C O doub 1.21 N N
20 C6 C7 C C sing 1.51 N N
21 C7 C8 C C sing 1.55 N N
22 C7 C11 C C sing 1.55 N N
23 C8 C9 C C sing 1.54 N N
24 C9 N6 C N sing 1.47 N N
25 C11 N6 C N sing 1.47 N N
26 N6 C10 N C sing 1.37 N N
27 C10 N7 C N doub 1.29 N N
28 C2 H1 C H sing 1.09 N N
29 C2 H2 C H sing 1.09 N N
30 C3 H3 C H sing 1.09 N N
31 C3 H4 C H sing 1.09 N N
32 C7 H5 C H sing 1.09 N N
33 C8 H6 C H sing 1.09 N N
34 C8 H7 C H sing 1.09 N N
35 C9 H8 C H sing 1.09 N N
36 C9 H9 C H sing 1.09 N N
37 C10 H10 C H sing 1.08 N N
38 C11 H11 C H sing 1.09 N N
39 C11 H12 C H sing 1.09 N N
40 C13 H13 C H sing 1.09 N N
41 C13 H14 C H sing 1.09 N N
42 N7 H15 N H sing 0.97 N N
43 N5 H16 N H sing 0.97 N N
44 C H17 C H sing 1.09 N N
45 C H18 C H sing 1.09 N N
46 N H19 N H sing 1.01 N N
47 N H23 N H sing 1.01 N N
48 N2 H22 N H sing 1.01 N N
49 N1 H21 N H sing 1.01 N N
50 N1 H20 N H sing 1.01 N N