Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
723
Bonds between two atoms of the molecule
Total Number of Bonds: 36
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
N
C6
N
C
sing
1.38
N
N
2
N
C7
N
C
sing
1.34
N
N
3
CL
C14
CL
C
sing
1.74
N
N
4
C1
C2
C
C
sing
1.51
N
N
5
C1
C3
C
C
doub
1.37
N
N
6
C1
C7
C
C
sing
1.41
N
N
7
O1
C7
O
C
doub
1.22
N
N
8
C2
C17
C
C
sing
1.51
N
N
9
O2
C17
O
C
sing
1.34
N
N
10
C3
C4
C
C
sing
1.48
N
N
11
C3
C5
C
C
sing
1.47
N
N
12
O3
C17
O
C
doub
1.21
N
N
13
C4
C8
C
C
doub
1.4
N
Y
14
C4
C12
C
C
sing
1.4
N
Y
15
C5
C6
C
C
doub
1.41
N
Y
16
C5
C13
C
C
sing
1.4
N
Y
17
C6
C16
C
C
sing
1.39
N
Y
18
C8
C9
C
C
sing
1.38
N
Y
19
C9
C10
C
C
doub
1.38
N
Y
20
C10
C11
C
C
sing
1.38
N
Y
21
C11
C12
C
C
doub
1.38
N
Y
22
C13
C14
C
C
doub
1.38
N
Y
23
C14
C15
C
C
sing
1.39
N
Y
24
C15
C16
C
C
doub
1.38
N
Y
25
N
HN
N
H
sing
0.97
N
N
26
C2
H2
C
H
sing
1.09
N
N
27
C2
H2A
C
H
sing
1.09
N
N
28
O2
HO2
O
H
sing
0.97
N
N
29
C8
H8
C
H
sing
1.08
N
N
30
C9
H9
C
H
sing
1.08
N
N
31
C10
H10
C
H
sing
1.08
N
N
32
C11
H11
C
H
sing
1.08
N
N
33
C12
H12
C
H
sing
1.08
N
N
34
C13
H13
C
H
sing
1.08
N
N
35
C15
H15
C
H
sing
1.08
N
N
36
C16
H16
C
H
sing
1.08
N
N