Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 7J1    

Bonds between two atoms of the molecule

Total Number of Bonds: 78


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C26 C27 C C doub 1.35 N Y
2 C26 N25 C N sing 1.37 N Y
3 O30 C24 O C doub 1.21 N N
4 C27 C28 C C sing 1.41 N Y
5 C24 N25 C N sing 1.35 N N
6 C24 C23 C C sing 1.51 N N
7 N25 C29 N C sing 1.37 N Y
8 C28 C29 C C doub 1.35 N Y
9 O18 C05 O C doub 1.21 N N
10 C23 C22 C C sing 1.53 N N
11 C22 N31 C N sing 1.47 N N
12 C22 C02 C C sing 1.51 N N
13 C15 C14 C C doub 1.36 N Y
14 C15 C16 C C sing 1.39 N Y
15 N03 C02 N C sing 1.35 N N
16 N03 C04 N C sing 1.47 N N
17 C14 C13 C C sing 1.41 N Y
18 C05 C04 C C sing 1.51 N N
19 C05 N06 C N sing 1.35 N N
20 C16 C17 C C doub 1.36 N Y
21 N31 C32 N C sing 1.35 N N
22 C19 C04 C C sing 1.53 N N
23 C19 O20 C O sing 1.43 N N
24 O41 C32 O C doub 1.21 N N
25 C02 O01 C O doub 1.21 N N
26 C32 C33 C C sing 1.51 N N
27 C07 N06 C N sing 1.47 N N
28 C07 C08 C C sing 1.51 N N
29 C13 C08 C C doub 1.41 N Y
30 C13 C12 C C sing 1.42 N Y
31 C17 C12 C C sing 1.41 N Y
32 O20 C21 O C sing 1.43 N N
33 C08 C09 C C sing 1.36 N Y
34 C33 C34 C C sing 1.53 N N
35 C12 C11 C C doub 1.41 N Y
36 C40 C39 C C doub 1.38 N Y
37 C40 C35 C C sing 1.38 N Y
38 C09 C10 C C doub 1.39 N Y
39 C34 C35 C C sing 1.51 N N
40 C11 C10 C C sing 1.36 N Y
41 C39 C38 C C sing 1.38 N Y
42 C35 C36 C C doub 1.38 N Y
43 C38 C37 C C doub 1.38 N Y
44 C36 C37 C C sing 1.38 N Y
45 C28 H1 C H sing 1.08 N N
46 C15 H2 C H sing 1.08 N N
47 C19 H3 C H sing 1.09 N N
48 C19 H4 C H sing 1.09 N N
49 C21 H5 C H sing 1.09 N N
50 C21 H6 C H sing 1.09 N N
51 C21 H7 C H sing 1.09 N N
52 C17 H8 C H sing 1.08 N N
53 C11 H9 C H sing 1.08 N N
54 C10 H10 C H sing 1.08 N N
55 C14 H11 C H sing 1.08 N N
56 C26 H12 C H sing 1.08 N N
57 C16 H13 C H sing 1.08 N N
58 C27 H14 C H sing 1.08 N N
59 C29 H15 C H sing 1.08 N N
60 N03 H16 N H sing 0.97 N N
61 C04 H17 C H sing 1.09 N N
62 N06 H18 N H sing 0.97 N N
63 C07 H19 C H sing 1.09 N N
64 C07 H20 C H sing 1.09 N N
65 C09 H21 C H sing 1.08 N N
66 C22 H22 C H sing 1.09 N N
67 C23 H23 C H sing 1.09 N N
68 C23 H24 C H sing 1.09 N N
69 N31 H25 N H sing 0.97 N N
70 C33 H26 C H sing 1.09 N N
71 C33 H27 C H sing 1.09 N N
72 C34 H28 C H sing 1.09 N N
73 C34 H29 C H sing 1.09 N N
74 C36 H30 C H sing 1.08 N N
75 C37 H31 C H sing 1.08 N N
76 C38 H32 C H sing 1.08 N N
77 C39 H33 C H sing 1.08 N N
78 C40 H34 C H sing 1.08 N N