Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 829    

Bonds between two atoms of the molecule

Total Number of Bonds: 44


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C6 N1 C N sing 1.36 N N
2 N1 C1' N C sing 1.46 N N
3 N1 C2 N C sing 1.35 N N
4 N3 C2 N C sing 1.33 N N
5 C2 O2 C O doub 1.22 N N
6 C4 N3 C N doub 1.33 N N
7 C5 C4 C C sing 1.41 N N
8 N4 C4 N C sing 1.38 N N
9 N4 HN4 N H sing 0.97 N N
10 N4 HN4A N H sing 0.97 N N
11 C5 C6 C C doub 1.35 N N
12 C5 H5 C H sing 1.08 N N
13 C6 H6 C H sing 1.08 N N
14 O15 C07 O C doub 1.22 N N
15 C13 C07 C C sing 1.48 N N
16 C07 N5' C N sing 1.35 N N
17 C09 C08 C C doub 1.38 N Y
18 C13 C08 C C sing 1.4 N Y
19 C08 H08 C H sing 1.08 N N
20 N10 C09 N C sing 1.32 N Y
21 C09 H09 C H sing 1.08 N N
22 C2' C1' C C sing 1.54 N N
23 C1' O4' C O sing 1.44 N N
24 C1' H1' C H sing 1.09 N N
25 C11 N10 C N doub 1.32 N Y
26 C11 C12 C C sing 1.38 N Y
27 C11 H11 C H sing 1.08 N N
28 C12 C13 C C doub 1.4 N Y
29 C12 H12 C H sing 1.08 N N
30 C3' C2' C C sing 1.54 N N
31 C2' O2' C O sing 1.43 N N
32 C2' H2' C H sing 1.09 N N
33 O2' HO2' O H sing 0.97 N N
34 O3' C3' O C sing 1.43 N N
35 C3' C4' C C sing 1.54 N N
36 C3' H3' C H sing 1.09 N N
37 O3' HO3' O H sing 0.97 N N
38 C5' C4' C C sing 1.53 N N
39 C4' O4' C O sing 1.44 N N
40 C4' H4' C H sing 1.09 N N
41 N5' C5' N C sing 1.46 N N
42 C5' H5' C H sing 1.09 N N
43 C5' H5'A C H sing 1.09 N N
44 N5' HN5' N H sing 0.97 N N