Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 8AA    

Bonds between two atoms of the molecule

Total Number of Bonds: 70


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OP2 P O P sing 1.61 N N
2 OP1 P O P sing 1.61 N N
3 P O5' P O sing 1.61 N N
4 C2 N1 C N doub 1.32 N N
5 N1 C6 N C sing 1.34 N N
6 N2 C2 N C sing 1.37 N N
7 C2 N3 C N sing 1.36 N N
8 N2 HN2 N H sing 0.97 N N
9 N2 HN2A N H sing 0.97 N N
10 C20 C3 C C doub 1.41 N Y
11 C3 C7 C C sing 1.36 N Y
12 C3 H3 C H sing 1.08 N N
13 N3 C4 N C sing 1.37 N N
14 N3 HN3 N H sing 0.97 N N
15 C4 N9 C N sing 1.36 N Y
16 C4 C5 C C doub 1.39 N Y
17 C8 N4 C N sing 1.39 N N
18 C9 N4 C N sing 1.35 N N
19 N4 C12 N C sing 1.4 N N
20 C6 C5 C C sing 1.46 N N
21 C5 N7 C N sing 1.36 N Y
22 C6 O6 C O doub 1.22 N N
23 C7 C11 C C doub 1.39 N Y
24 C7 H7 C H sing 1.08 N N
25 C8 N7 C N doub 1.31 N Y
26 N9 C8 N C sing 1.37 N Y
27 O11 C9 O C doub 1.21 N N
28 C9 C10 C C sing 1.51 N N
29 C1' N9 C N sing 1.47 N N
30 C2' C1' C C sing 1.54 N N
31 O4' C1' O C sing 1.44 N N
32 C1' H1' C H sing 1.09 N N
33 C10 H10 C H sing 1.09 N N
34 C10 H10A C H sing 1.09 N N
35 C10 H10B C H sing 1.09 N N
36 C22 C11 C C sing 1.36 N Y
37 C11 H11 C H sing 1.08 N N
38 C12 C13 C C sing 1.4 N Y
39 C12 C17 C C doub 1.36 N Y
40 C13 C14 C C doub 1.36 N Y
41 C13 H13 C H sing 1.08 N N
42 C14 C15 C C sing 1.41 N Y
43 C14 H14 C H sing 1.08 N N
44 C16 C15 C C sing 1.47 N Y
45 C15 C18 C C doub 1.39 N Y
46 C17 C16 C C sing 1.41 N Y
47 C16 C21 C C doub 1.39 N Y
48 C17 H17 C H sing 1.08 N N
49 C18 C19 C C sing 1.39 N Y
50 C18 H18 C H sing 1.08 N N
51 C20 C19 C C sing 1.47 N Y
52 C19 C22 C C doub 1.41 N Y
53 C3' C2' C C sing 1.55 N N
54 C2' H2' C H sing 1.09 N N
55 C2' H2'A C H sing 1.09 N N
56 C21 C20 C C sing 1.39 N Y
57 C21 H21 C H sing 1.08 N N
58 C22 H22 C H sing 1.08 N N
59 O3' C3' O C sing 1.43 N N
60 C3' C4' C C sing 1.55 N N
61 C3' H3' C H sing 1.09 N N
62 O3' HO3' O H sing 0.97 N N
63 C5' C4' C C sing 1.53 N N
64 C4' O4' C O sing 1.45 N N
65 C4' H4' C H sing 1.09 N N
66 C5' O5' C O sing 1.43 N N
67 C5' H5' C H sing 1.09 N N
68 C5' H5'A C H sing 1.09 N N
69 OP1 HOP1 O H sing 0.97 N N
70 OP2 HOP2 O H sing 0.97 N N