Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 8E2    

Bonds between two atoms of the molecule

Total Number of Bonds: 114


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C9 O1 C O sing 1.43 N N
2 O1 C1 O C sing 1.43 N N
3 C6 O4 C O sing 1.43 N N
4 C6 C5 C C sing 1.53 N N
5 C7 O4 C O sing 1.43 N N
6 C7 C8 C C sing 1.53 N N
7 O3 C5 O C sing 1.43 N N
8 O3 C4 O C sing 1.43 N N
9 C8 N1 C N sing 1.46 N N
10 C1 C2 C C sing 1.53 N N
11 C32 C33 C C doub 1.38 N Y
12 C32 C31 C C sing 1.39 N Y
13 C33 C28 C C sing 1.39 N Y
14 C4 C3 C C sing 1.53 N N
15 C34 O7 C O sing 1.43 N N
16 C34 C35 C C sing 1.51 N N
17 C24 C25 C C sing 1.53 N N
18 C24 N9 C N sing 1.47 N N
19 C25 N10 C N sing 1.47 N N
20 O7 C31 O C sing 1.36 N N
21 O2 C3 O C sing 1.43 N N
22 O2 C2 O C sing 1.43 N N
23 C31 C30 C C doub 1.39 N Y
24 N1 C35 N C sing 1.35 N N
25 C28 N10 C N sing 1.4 N N
26 C28 C29 C C doub 1.39 N Y
27 N10 C26 N C sing 1.47 N N
28 C35 O8 C O doub 1.21 N N
29 C23 N9 C N sing 1.47 N N
30 C23 C22 C C sing 1.53 N N
31 N9 C27 N C sing 1.47 N N
32 C30 C29 C C sing 1.38 N Y
33 C26 C27 C C sing 1.53 N N
34 C22 N5 C N sing 1.47 N N
35 N6 N5 N N sing 1.4 N Y
36 N6 C19 N C doub 1.3 N Y
37 N5 C15 N C sing 1.36 N Y
38 C19 C16 C C sing 1.41 N Y
39 C15 C16 C C doub 1.4 N Y
40 C15 N2 C N sing 1.34 N Y
41 C16 C17 C C sing 1.46 N Y
42 N2 C18 N C doub 1.31 N Y
43 C17 N7 C N doub 1.32 N Y
44 C17 N3 C N sing 1.37 N Y
45 C18 N3 C N sing 1.36 N Y
46 C18 N4 C N sing 1.38 N N
47 N7 C20 N C sing 1.34 N Y
48 N3 N8 N N sing 1.4 N Y
49 C20 N8 C N doub 1.32 N Y
50 C20 C21 C C sing 1.48 N N
51 C21 C36 C C doub 1.36 N Y
52 C21 O9 C O sing 1.35 N Y
53 C36 C37 C C sing 1.41 N Y
54 O9 C38 O C sing 1.34 N Y
55 C38 C37 C C doub 1.35 N Y
56 C29 H1 C H sing 1.08 N N
57 C30 H2 C H sing 1.08 N N
58 C32 H3 C H sing 1.08 N N
59 C34 H4 C H sing 1.09 N N
60 C25 H12 C H sing 1.09 N N
61 C25 H13 C H sing 1.09 N N
62 C1 H14 C H sing 1.09 N N
63 C1 H15 C H sing 1.09 N N
64 C2 H16 C H sing 1.09 N N
65 C2 H17 C H sing 1.09 N N
66 C24 H18 C H sing 1.09 N N
67 C24 H19 C H sing 1.09 N N
68 C26 H20 C H sing 1.09 N N
69 C26 H21 C H sing 1.09 N N
70 C27 H22 C H sing 1.09 N N
71 C27 H23 C H sing 1.09 N N
72 C3 H24 C H sing 1.09 N N
73 C3 H25 C H sing 1.09 N N
74 C33 H26 C H sing 1.08 N N
75 C37 H27 C H sing 1.08 N N
76 C38 H28 C H sing 1.08 N N
77 C4 H29 C H sing 1.09 N N
78 C4 H30 C H sing 1.09 N N
79 C5 H31 C H sing 1.09 N N
80 C5 H32 C H sing 1.09 N N
81 C6 H33 C H sing 1.09 N N
82 C6 H34 C H sing 1.09 N N
83 C7 H35 C H sing 1.09 N N
84 C7 H36 C H sing 1.09 N N
85 C8 H37 C H sing 1.09 N N
86 C8 H38 C H sing 1.09 N N
87 C9 H39 C H sing 1.09 N N
88 C9 H40 C H sing 1.09 N N
89 N1 H42 N H sing 0.97 N N
90 N4 H43 N H sing 0.97 N N
91 N4 H44 N H sing 0.97 N N
92 C9 C10 C C sing 1.51 N N
93 C10 O5 C O doub 1.21 N N
94 C10 O6 C O sing 1.34 N N
95 O6 C11 O C sing 1.45 N N
96 C11 C13 C C sing 1.53 N N
97 C11 C14 C C sing 1.53 N N
98 C11 C12 C C sing 1.53 N N
99 C34 H5 C H sing 1.09 N N
100 C36 H6 C H sing 1.08 N N
101 C22 H7 C H sing 1.09 N N
102 C22 H8 C H sing 1.09 N N
103 C23 H9 C H sing 1.09 N N
104 C23 H10 C H sing 1.09 N N
105 C19 H11 C H sing 1.08 N N
106 C13 H41 C H sing 1.09 N N
107 C13 H45 C H sing 1.09 N N
108 C13 H46 C H sing 1.09 N N
109 C14 H47 C H sing 1.09 N N
110 C14 H48 C H sing 1.09 N N
111 C14 H49 C H sing 1.09 N N
112 C12 H50 C H sing 1.09 N N
113 C12 H51 C H sing 1.09 N N
114 C12 H52 C H sing 1.09 N N