Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 8NI    

Bonds between two atoms of the molecule

Total Number of Bonds: 41


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C5' C4' C C sing 1.53 N N
2 C5' O5' C O sing 1.43 N N
3 O3' C3' O C sing 1.43 N N
4 C4' C3' C C sing 1.55 N N
5 C4' O4' C O sing 1.45 N N
6 C3' C2' C C sing 1.55 N N
7 O5' P O P sing 1.61 N N
8 P OP2 P O sing 1.61 N N
9 P OP1 P O doub 1.48 N N
10 O4' C1' O C sing 1.44 N N
11 O8 C8 O C doub 1.21 N N
12 C2' C1' C C sing 1.54 N N
13 C1' N9 C N sing 1.46 N N
14 C8 N7 C N sing 1.35 N N
15 N7 C5 N C sing 1.46 N N
16 N9 C4 N C sing 1.35 N N
17 C5 C4 C C sing 1.52 N N
18 C5 C6 C C sing 1.52 N N
19 C4 N3 C N doub 1.31 N N
20 O6 C6 O C doub 1.21 N N
21 C6 N1 C N sing 1.33 N N
22 N3 C2 N C sing 1.33 N N
23 N1 C2 N C doub 1.32 N N
24 C2 N2 C N sing 1.37 N N
25 C5 H1 C H sing 1.09 N N
26 N2 H2 N H sing 0.97 N N
27 N2 H3 N H sing 0.97 N N
28 N7 H4 N H sing 0.97 N N
29 C8 H5 C H sing 1.08 N N
30 C1' H6 C H sing 1.09 N N
31 C2' H7 C H sing 1.09 N N
32 C2' H8 C H sing 1.09 N N
33 C3' H9 C H sing 1.09 N N
34 C4' H10 C H sing 1.09 N N
35 C5' H11 C H sing 1.09 N N
36 C5' H12 C H sing 1.09 N N
37 N9 H13 N H sing 0.97 N N
38 O3' H14 O H sing 0.97 N N
39 OP2 H16 O H sing 0.97 N N
40 P OP3 P O sing 1.61 N N
41 OP3 H15 O H sing 0.97 N N