Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 8RJ    

Bonds between two atoms of the molecule

Total Number of Bonds: 31


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1 P O P doub 1.48 N N
2 OP2 P O P sing 1.61 N N
3 P O5' P O sing 1.61 N N
4 O5' C3G O C sing 1.43 N N
5 C3G C2G C C sing 1.53 N N
6 O2G C2G O C sing 1.43 N N
7 C2G C1G C C sing 1.53 N N
8 C1G N1 C N sing 1.46 N N
9 O2 C2 O C doub 1.22 N N
10 N1 C2 N C sing 1.35 N N
11 N1 C6 N C sing 1.37 N N
12 C2 N3 C N sing 1.35 N N
13 C6 C5 C C doub 1.35 N N
14 N3 C4 N C sing 1.35 N N
15 C5 C4 C C sing 1.42 N N
16 C5 C5M C C sing 1.51 N N
17 C4 O4 C O doub 1.22 N N
18 P OP3 P O sing 1.61 N N
19 OP2 HOP2 O H sing 0.97 N N
20 N3 H2 N H sing 0.97 N N
21 C5M H3 C H sing 1.09 N N
22 C5M H4 C H sing 1.09 N N
23 C5M H5 C H sing 1.09 N N
24 C6 H6 C H sing 1.08 N N
25 C1G H7 C H sing 1.09 N N
26 C1G H8 C H sing 1.09 N N
27 C2G H9 C H sing 1.09 N N
28 O2G H10 O H sing 0.97 N N
29 C3G H11 C H sing 1.09 N N
30 C3G H12 C H sing 1.09 N N
31 OP3 HOP3 O H sing 0.97 N N