Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 8U9    

Bonds between two atoms of the molecule

Total Number of Bonds: 47


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N2 C20 N C trip 1.14 N N
2 C20 C12 C C sing 1.43 N N
3 O4 S1 O S doub 1.42 N N
4 F1 C21 F C sing 1.4 N N
5 C12 C13 C C doub 1.4 N Y
6 C12 C11 C C sing 1.4 N Y
7 C13 C8 C C sing 1.38 N Y
8 CL1 C17 CL C sing 1.74 N N
9 C16 C17 C C doub 1.38 N Y
10 C16 C15 C C sing 1.38 N Y
11 C17 C18 C C sing 1.38 N Y
12 C15 C14 C C doub 1.39 N Y
13 C18 C21 C C sing 1.51 N N
14 C18 C19 C C doub 1.38 N Y
15 C14 C19 C C sing 1.39 N Y
16 C14 O5 C O sing 1.36 N N
17 C21 F3 C F sing 1.4 N N
18 C21 F2 C F sing 1.4 N N
19 O5 C11 O C sing 1.36 N N
20 S1 O3 S O doub 1.42 N N
21 S1 N1 S N sing 1.66 N N
22 S1 C6 S C sing 1.76 N N
23 C11 C10 C C doub 1.39 N Y
24 C5 C6 C C doub 1.38 N Y
25 C5 C4 C C sing 1.38 N Y
26 C8 N1 C N sing 1.4 N N
27 C8 C9 C C doub 1.39 N Y
28 C6 C1 C C sing 1.38 N Y
29 C4 C3 C C doub 1.4 N Y
30 C10 C9 C C sing 1.38 N Y
31 C1 C2 C C doub 1.38 N Y
32 C3 C2 C C sing 1.4 N Y
33 C3 C7 C C sing 1.48 N N
34 O1 C7 O C doub 1.21 N N
35 C7 O2 C O sing 1.35 N N
36 C4 H1 C H sing 1.08 N N
37 C5 H2 C H sing 1.08 N N
38 C9 H3 C H sing 1.08 N N
39 C10 H4 C H sing 1.08 N N
40 C13 H5 C H sing 1.08 N N
41 N1 H6 N H sing 0.97 N N
42 C1 H7 C H sing 1.08 N N
43 C15 H8 C H sing 1.08 N N
44 C16 H9 C H sing 1.08 N N
45 C19 H10 C H sing 1.08 N N
46 C2 H11 C H sing 1.08 N N
47 O2 H12 O H sing 0.97 N N