Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 8VK    

Bonds between two atoms of the molecule

Total Number of Bonds: 106


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C19 C18 C C doub 1.38 N Y
2 C19 C15 C C sing 1.38 N Y
3 C18 C17 C C sing 1.38 N Y
4 CL C15 CL C sing 1.74 N N
5 C15 C14 C C doub 1.38 N Y
6 C17 C16 C C doub 1.38 N Y
7 O5 C32 O C doub 1.21 N N
8 C14 C16 C C sing 1.38 N Y
9 C14 C13 C C sing 1.51 N N
10 C32 C33 C C sing 1.51 N N
11 C32 N4 C N sing 1.35 N N
12 C13 C12 C C sing 1.53 N N
13 C12 N4 C N sing 1.47 N N
14 C12 C11 C C sing 1.51 N N
15 C30 C29 C C sing 1.55 N N
16 C30 N5 C N sing 1.47 N N
17 C29 C34 C C sing 1.55 N N
18 N5 C11 N C sing 1.35 N N
19 N5 C35 N C sing 1.47 N N
20 C11 O4 C O doub 1.21 N N
21 C34 C35 C C sing 1.54 N N
22 O3 C31 O C doub 1.21 N N
23 C35 C31 C C sing 1.51 N N
24 C35 C26 C C sing 1.51 N N
25 C31 N3 C N sing 1.35 N N
26 C50 C49 C C sing 1.53 N N
27 C26 C28 C C doub 1.3 N N
28 N3 C10 N C sing 1.47 N N
29 N3 C27 N C sing 1.48 N N
30 C49 C4 C C sing 1.53 N N
31 O6 C20 O C doub 1.21 N N
32 C28 C27 C C sing 1.5 N N
33 C6 C5 C C sing 1.48 N N
34 C6 C7 C C doub 1.26 N N
35 C5 C4 C C sing 1.55 N N
36 C5 N1 C N sing 1.46 N N
37 C20 C10 C C sing 1.51 N N
38 C20 N2 C N sing 1.35 N N
39 C21 N2 C N sing 1.46 N N
40 C21 C8 C C sing 1.52 N N
41 C21 C25 C C sing 1.46 N N
42 C23 C8 C C sing 1.54 N N
43 C23 C22 C C sing 1.55 N N
44 C10 C9 C C sing 1.55 N N
45 N2 C22 N C sing 1.48 N N
46 C7 C8 C C sing 1.47 N N
47 C27 C24 C C sing 1.55 N N
48 C4 C3 C C sing 1.54 N N
49 C3 C2 C C sing 1.53 N N
50 N1 C25 N C sing 1.33 N N
51 N1 C2 N C sing 1.48 N N
52 C25 O7 C O doub 1.21 N N
53 C24 C9 C C sing 1.56 N N
54 C2 C1 C C sing 1.51 N N
55 C1 O1 C O sing 1.34 N N
56 C1 O2 C O doub 1.21 N N
57 O1 C51 O C sing 1.45 N N
58 C51 C52 C C sing 1.53 N N
59 C2 H25 C H sing 1.09 N N
60 C3 H32 C H sing 1.09 N N
61 C3 H31 C H sing 1.09 N N
62 C4 H41 C H sing 1.09 N N
63 C5 H5 C H sing 1.09 N N
64 C6 H6 C H sing 1.08 N N
65 C10 H10 C H sing 1.09 N N
66 C12 H12 C H sing 1.09 N N
67 C13 H2A C H sing 1.09 N N
68 C13 H13 C H sing 1.09 N N
69 C21 H21 C H sing 1.09 N N
70 C22 H93 C H sing 1.09 N N
71 C22 H22 C H sing 1.09 N N
72 C23 H23 C H sing 1.09 N N
73 C23 H94 C H sing 1.09 N N
74 C24 H4A C H sing 1.09 N N
75 C24 H24 C H sing 1.09 N N
76 C30 H30 C H sing 1.09 N N
77 C30 H36 C H sing 1.09 N N
78 C52 H99 C H sing 1.09 N N
79 C52 H52 C H sing 1.09 N N
80 C52 H53 C H sing 1.09 N N
81 C16 H16 C H sing 1.08 N N
82 C17 H17 C H sing 1.08 N N
83 C18 H18 C H sing 1.08 N N
84 C19 H19 C H sing 1.08 N N
85 C26 H26 C H sing 1.08 N N
86 C27 H27 C H sing 1.09 N N
87 C28 H28 C H sing 1.08 N N
88 C29 H37 C H sing 1.09 N N
89 C29 H29 C H sing 1.09 N N
90 C33 H35 C H sing 1.09 N N
91 C33 H33 C H sing 1.09 N N
92 C33 H34 C H sing 1.09 N N
93 C34 H39 C H sing 1.09 N N
94 C34 H38 C H sing 1.09 N N
95 C49 H95 C H sing 1.09 N N
96 C49 H49 C H sing 1.09 N N
97 C50 H97 C H sing 1.09 N N
98 C50 H50 C H sing 1.09 N N
99 C50 H96 C H sing 1.09 N N
100 C51 H51 C H sing 1.09 N N
101 C51 H98 C H sing 1.09 N N
102 C7 H7 C H sing 1.08 N N
103 C8 H8 C H sing 1.09 N N
104 C9 H92 C H sing 1.09 N N
105 C9 H91 C H sing 1.09 N N
106 N4 H42 N H sing 0.97 N N