Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 8WD    

Bonds between two atoms of the molecule

Total Number of Bonds: 63


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O45 C44 O C doub 1.22 N N
2 N01 C04 N C sing 1.47 N N
3 C39 C37 C C sing 1.54 N N
4 C39 C24 C C sing 1.54 N N
5 C17 C04 C C sing 1.53 N N
6 C17 C14 C C sing 1.53 N N
7 C06 C04 C C sing 1.53 N N
8 C06 C09 C C sing 1.53 N N
9 C37 N42 C N sing 1.46 N N
10 C37 C34 C C sing 1.53 N N
11 C44 N42 C N sing 1.35 N N
12 C44 C46 C C sing 1.48 N N
13 C12 C14 C C sing 1.53 N N
14 C12 C09 C C sing 1.53 N N
15 C12 S20 C S sing 1.81 N N
16 C24 N23 C N sing 1.48 N N
17 C24 C26 C C sing 1.55 N N
18 C50 C46 C C sing 1.42 N Y
19 C50 C49 C C doub 1.35 N Y
20 C46 N47 C N doub 1.31 N Y
21 O22 S20 O S doub 1.42 N N
22 C54 C57 C C sing 1.53 N N
23 C54 C52 C C sing 1.53 N N
24 N23 S20 N S sing 1.66 N N
25 N23 C32 N C sing 1.48 N N
26 C34 C32 C C sing 1.54 N N
27 S20 O21 S O doub 1.42 N N
28 C26 C29 C C sing 1.54 N N
29 C49 C52 C C sing 1.51 N N
30 C49 O48 C O sing 1.34 N Y
31 C57 C52 C C sing 1.53 N N
32 N47 O48 N O sing 1.21 N Y
33 C32 C29 C C sing 1.54 N N
34 N01 H1 N H sing 1.01 N N
35 N01 H2 N H sing 1.01 N N
36 C04 H4 C H sing 1.09 N N
37 C06 H5 C H sing 1.09 N N
38 C06 H6 C H sing 1.09 N N
39 C09 H7 C H sing 1.09 N N
40 C09 H8 C H sing 1.09 N N
41 C12 H9 C H sing 1.09 N N
42 C14 H10 C H sing 1.09 N N
43 C14 H11 C H sing 1.09 N N
44 C17 H12 C H sing 1.09 N N
45 C17 H13 C H sing 1.09 N N
46 C24 H14 C H sing 1.09 N N
47 C26 H15 C H sing 1.09 N N
48 C26 H16 C H sing 1.09 N N
49 C29 H17 C H sing 1.09 N N
50 C29 H18 C H sing 1.09 N N
51 C32 H19 C H sing 1.09 N N
52 C34 H20 C H sing 1.09 N N
53 C34 H21 C H sing 1.09 N N
54 C37 H22 C H sing 1.09 N N
55 C39 H23 C H sing 1.09 N N
56 C39 H24 C H sing 1.09 N N
57 N42 H25 N H sing 0.97 N N
58 C50 H26 C H sing 1.08 N N
59 C52 H27 C H sing 1.09 N N
60 C54 H28 C H sing 1.09 N N
61 C54 H29 C H sing 1.09 N N
62 C57 H30 C H sing 1.09 N N
63 C57 H31 C H sing 1.09 N N