Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 9B5    

Bonds between two atoms of the molecule

Total Number of Bonds: 58


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 NAP CAL N C doub 1.29 N Y
2 NAP CAX N C sing 1.31 N Y
3 CAL SAS C S sing 1.71 N Y
4 CAB CAX C C sing 1.51 N N
5 CAX CAZ C C doub 1.35 N Y
6 SAS CAZ S C sing 1.76 N Y
7 CAZ CAY C C sing 1.48 N N
8 CAY CAK C C doub 1.4 N Y
9 CAY CAJ C C sing 1.4 N Y
10 CAK CAI C C sing 1.38 N Y
11 CAJ CAH C C doub 1.38 N Y
12 CAI CAW C C doub 1.38 N Y
13 CAH CAW C C sing 1.38 N Y
14 CAW CAM C C sing 1.51 N N
15 CAM NAQ C N sing 1.47 N N
16 NAQ CAU N C sing 1.35 N N
17 CAN CBC C C sing 1.54 N N
18 CAN CBA C C sing 1.55 N N
19 CAU OAE C O doub 1.21 N N
20 CAU CBC C C sing 1.51 N N
21 CBC NBD C N sing 1.47 N N
22 CBA OAG C O sing 1.43 N N
23 CBA CAO C C sing 1.55 N N
24 NBD CAO N C sing 1.47 N N
25 NBD C N C sing 1.35 N N
26 O C O C doub 1.21 N N
27 C CA C C sing 1.51 N N
28 CA CB C C sing 1.53 N N
29 CA N C N sing 1.46 N N
30 N CAT N C sing 1.35 N N
31 OAD CAT O C doub 1.21 N N
32 CAT CAA C C sing 1.51 N N
33 CAA H1 C H sing 1.09 N N
34 CAA H2 C H sing 1.09 N N
35 CAA H3 C H sing 1.09 N N
36 N H4 N H sing 0.97 N N
37 CA H5 C H sing 1.09 N N
38 CB H6 C H sing 1.09 N N
39 CB H7 C H sing 1.09 N N
40 CB H8 C H sing 1.09 N N
41 CAO H9 C H sing 1.09 N N
42 CAO H10 C H sing 1.09 N N
43 CBA H11 C H sing 1.09 N N
44 OAG H12 O H sing 0.97 N N
45 CAN H13 C H sing 1.09 N N
46 CAN H14 C H sing 1.09 N N
47 CBC H15 C H sing 1.09 N N
48 NAQ H16 N H sing 0.97 N N
49 CAM H17 C H sing 1.09 N N
50 CAM H18 C H sing 1.09 N N
51 CAI H19 C H sing 1.08 N N
52 CAK H20 C H sing 1.08 N N
53 CAH H21 C H sing 1.08 N N
54 CAJ H22 C H sing 1.08 N N
55 CAL H23 C H sing 1.08 N N
56 CAB H24 C H sing 1.09 N N
57 CAB H25 C H sing 1.09 N N
58 CAB H26 C H sing 1.09 N N