Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 9TD    

Bonds between two atoms of the molecule

Total Number of Bonds: 53


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O03 P02 O P doub 1.48 N N
2 P02 O31 P O sing 1.61 N N
3 P02 O01 P O sing 1.61 N N
4 P02 O04 P O sing 1.61 N N
5 O04 C05 O C sing 1.43 N N
6 C05 C06 C C sing 1.51 N N
7 C11 C10 C C sing 1.51 N N
8 C11 C12 C C sing 1.53 N N
9 C06 C30 C C doub 1.38 N Y
10 C06 C07 C C sing 1.4 N Y
11 C08 C07 C C sing 1.47 N N
12 C08 N09 C N doub 1.31 N N
13 O23 C22 O C doub 1.22 N N
14 C30 N29 C N sing 1.32 N Y
15 C10 N09 C N sing 1.34 N N
16 C10 C22 C C sing 1.38 N N
17 C07 C25 C C doub 1.41 N Y
18 C12 C13 C C sing 1.51 N N
19 C12 C16 C C sing 1.51 N N
20 C22 O24 C O sing 1.35 N N
21 N29 C27 N C doub 1.32 N Y
22 C21 C13 C C doub 1.38 N Y
23 C21 C20 C C sing 1.38 N Y
24 C25 C27 C C sing 1.38 N Y
25 C25 O26 C O sing 1.36 N N
26 O17 C16 O C doub 1.21 N N
27 C27 C28 C C sing 1.51 N N
28 C13 C14 C C sing 1.39 N Y
29 C16 N15 C N sing 1.34 N N
30 C20 C19 C C doub 1.38 N Y
31 C14 N15 C N sing 1.4 N N
32 C14 C18 C C doub 1.39 N Y
33 C19 C18 C C sing 1.38 N Y
34 C05 H1 C H sing 1.09 N N
35 C05 H2 C H sing 1.09 N N
36 C08 H3 C H sing 1.08 N N
37 C11 H5 C H sing 1.09 N N
38 C11 H6 C H sing 1.09 N N
39 C12 H7 C H sing 1.09 N N
40 C18 H8 C H sing 1.08 N N
41 C19 H9 C H sing 1.08 N N
42 C20 H10 C H sing 1.08 N N
43 C21 H11 C H sing 1.08 N N
44 C28 H12 C H sing 1.09 N N
45 C28 H13 C H sing 1.09 N N
46 C28 H14 C H sing 1.09 N N
47 C30 H15 C H sing 1.08 N N
48 N15 H16 N H sing 0.97 N N
49 O01 H17 O H sing 0.97 N N
50 O24 H18 O H sing 0.97 N N
51 O26 H19 O H sing 0.97 N N
52 O31 H20 O H sing 0.97 N N
53 N09 H21 N H sing 0.97 N N