Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
9XH
Bonds between two atoms of the molecule
Total Number of Bonds: 71
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
F28
C27
F
C
sing
1.35
N
N
2
C3
C2
C
C
sing
1.38
N
Y
3
C3
C4
C
C
doub
1.38
N
Y
4
C27
C26
C
C
doub
1.38
N
Y
5
C27
C29
C
C
sing
1.38
N
Y
6
C26
C25
C
C
sing
1.38
N
Y
7
C2
C1
C
C
doub
1.38
N
Y
8
C4
C5
C
C
sing
1.38
N
Y
9
C29
C30
C
C
doub
1.38
N
Y
10
C33
C32
C
C
doub
1.38
N
Y
11
C33
C34
C
C
sing
1.38
N
Y
12
C32
C31
C
C
sing
1.38
N
Y
13
C25
C24
C
C
doub
1.38
N
Y
14
O16
C15
O
C
doub
1.21
N
N
15
C30
C24
C
C
sing
1.38
N
Y
16
C24
C23
C
C
sing
1.51
N
N
17
C1
C6
C
C
sing
1.38
N
Y
18
C5
C6
C
C
doub
1.38
N
Y
19
C5
C9
C
C
sing
1.51
N
N
20
F35
C34
F
C
sing
1.35
N
N
21
C34
C36
C
C
doub
1.38
N
Y
22
C6
C7
C
C
sing
1.51
N
N
23
C31
C23
C
C
sing
1.51
N
N
24
C31
C37
C
C
doub
1.38
N
Y
25
C23
N20
C
N
sing
1.47
N
N
26
C22
N17
C
N
sing
1.47
N
N
27
C22
C21
C
C
sing
1.53
N
N
28
C9
N8
C
N
sing
1.47
N
N
29
N17
C15
N
C
sing
1.35
N
N
30
N17
C18
N
C
sing
1.47
N
N
31
C15
C14
C
C
sing
1.51
N
N
32
C18
C19
C
C
sing
1.53
N
N
33
C7
N8
C
N
sing
1.47
N
N
34
N8
C10
N
C
sing
1.35
N
N
35
C36
C37
C
C
sing
1.38
N
Y
36
C12
C14
C
C
sing
1.53
N
N
37
C12
C10
C
C
sing
1.51
N
N
38
C12
N13
C
N
sing
1.47
N
N
39
N20
C21
N
C
sing
1.47
N
N
40
N20
C19
N
C
sing
1.47
N
N
41
C10
O11
C
O
doub
1.21
N
N
42
C1
H1
C
H
sing
1.08
N
N
43
C2
H2
C
H
sing
1.08
N
N
44
C3
H3
C
H
sing
1.08
N
N
45
C4
H4
C
H
sing
1.08
N
N
46
C7
H5
C
H
sing
1.09
N
N
47
C12
H6
C
H
sing
1.09
N
N
48
N13
H7
N
H
sing
1.01
N
N
49
N13
H8
N
H
sing
1.01
N
N
50
C18
H11
C
H
sing
1.09
N
N
51
C18
H12
C
H
sing
1.09
N
N
52
C19
H13
C
H
sing
1.09
N
N
53
C19
H14
C
H
sing
1.09
N
N
54
C21
H15
C
H
sing
1.09
N
N
55
C21
H16
C
H
sing
1.09
N
N
56
C23
H17
C
H
sing
1.09
N
N
57
C30
H18
C
H
sing
1.08
N
N
58
C32
H19
C
H
sing
1.08
N
N
59
C33
H20
C
H
sing
1.08
N
N
60
C36
H21
C
H
sing
1.08
N
N
61
C37
H22
C
H
sing
1.08
N
N
62
C9
H23
C
H
sing
1.09
N
N
63
C14
H24
C
H
sing
1.09
N
N
64
C14
H25
C
H
sing
1.09
N
N
65
C22
H29
C
H
sing
1.09
N
N
66
C22
H30
C
H
sing
1.09
N
N
67
C25
H31
C
H
sing
1.08
N
N
68
C26
H32
C
H
sing
1.08
N
N
69
C29
H33
C
H
sing
1.08
N
N
70
C9
H9
C
H
sing
1.09
N
N
71
C7
H10
C
H
sing
1.09
N
N