Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : A1AGV    

Bonds between two atoms of the molecule

Total Number of Bonds: 86


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C27 C26 C C sing 1.58 N N
2 C27 C23 C C sing 1.57 N N
3 C26 C25 C C sing 1.54 N N
4 C26 C21 C C sing 1.56 N N
5 C9 C8 C C sing 1.53 N N
6 C23 C24 C C sing 1.53 N N
7 C23 C22 C C sing 1.56 N N
8 C25 C24 C C doub 1.32 N N
9 C21 C22 C C sing 1.55 N N
10 C21 C20 C C sing 1.53 N N
11 C8 C10 C C sing 1.53 N N
12 C8 C7 C C sing 1.53 N N
13 C20 N4 C N sing 1.46 N N
14 C7 C6 C C sing 1.53 N N
15 C19 N4 C N sing 1.47 N N
16 C19 C3 C C sing 1.54 N N
17 N1 C6 N C sing 1.46 N N
18 N1 C5 N C sing 1.35 N N
19 N4 C1 N C sing 1.34 N N
20 C6 C11 C C sing 1.51 N N
21 O2 C5 O C sing 1.35 N N
22 O2 C4 O C sing 1.45 N N
23 C5 O6 C O doub 1.21 N N
24 C1 O1 C O doub 1.21 N N
25 C1 C2 C C sing 1.51 N N
26 C3 C4 C C sing 1.53 N N
27 C3 C2 C C sing 1.55 N N
28 C11 O5 C O doub 1.21 N N
29 C11 N2 C N sing 1.35 N N
30 N2 C12 N C sing 1.47 N N
31 C12 C18 C C sing 1.53 N N
32 C12 C13 C C sing 1.53 N N
33 C18 O4 C O sing 1.43 N N
34 C13 C14 C C sing 1.53 N N
35 C14 C17 C C sing 1.55 N N
36 C14 C15 C C sing 1.51 N N
37 C17 C16 C C sing 1.54 N N
38 C15 O3 C O doub 1.21 N N
39 C15 N3 C N sing 1.34 N N
40 C16 N3 C N sing 1.47 N N
41 C18 H1 C H sing 1.09 N N
42 C18 S1 C S sing 1.81 N N
43 C16 H3 C H sing 1.09 N N
44 C16 H4 C H sing 1.09 N N
45 C14 H5 C H sing 1.09 N N
46 C12 H6 C H sing 1.09 N N
47 C10 H7 C H sing 1.09 N N
48 C10 H8 C H sing 1.09 N N
49 C10 H9 C H sing 1.09 N N
50 C19 H10 C H sing 1.09 N N
51 C19 H11 C H sing 1.09 N N
52 C22 H12 C H sing 1.09 N N
53 C22 H13 C H sing 1.09 N N
54 C6 H14 C H sing 1.09 N N
55 C7 H15 C H sing 1.09 N N
56 C7 H16 C H sing 1.09 N N
57 C8 H17 C H sing 1.09 N N
58 C9 H18 C H sing 1.09 N N
59 C9 H19 C H sing 1.09 N N
60 C9 H20 C H sing 1.09 N N
61 O4 H21 O H sing 0.97 N N
62 C3 H22 C H sing 1.09 N N
63 C2 H23 C H sing 1.09 N N
64 C2 H24 C H sing 1.09 N N
65 C17 H25 C H sing 1.09 N N
66 C17 H26 C H sing 1.09 N N
67 C21 H27 C H sing 1.09 N N
68 C23 H28 C H sing 1.09 N N
69 C24 H29 C H sing 1.08 N N
70 C25 H31 C H sing 1.08 N N
71 C26 H33 C H sing 1.09 N N
72 C13 H34 C H sing 1.09 N N
73 C13 H35 C H sing 1.09 N N
74 C20 H36 C H sing 1.09 N N
75 C20 H37 C H sing 1.09 N N
76 C27 H38 C H sing 1.09 N N
77 C27 H39 C H sing 1.09 N N
78 C4 H40 C H sing 1.09 N N
79 C4 H41 C H sing 1.09 N N
80 N1 H42 N H sing 0.97 N N
81 N2 H43 N H sing 0.97 N N
82 N3 H44 N H sing 0.97 N N
83 S1 O8 S O doub 1.42 N N
84 S1 O7 S O doub 1.42 N N
85 S1 O9 S O sing 1.52 N N
86 O9 H2 O H sing 0.97 N N