Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : A1AK0    

Bonds between two atoms of the molecule

Total Number of Bonds: 46


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C O C O sing 1.43 N N
2 O C1 O C sing 1.36 N N
3 C1 C2 C C doub 1.39 N Y
4 C2 C3 C C sing 1.38 N Y
5 C3 C4 C C doub 1.38 N Y
6 C4 C5 C C sing 1.51 N N
7 C6 C5 C C sing 1.53 N N
8 C7 C6 C C sing 1.51 N N
9 C7 N C N doub 1.31 N Y
10 N N1 N N sing 1.29 N Y
11 N1 N2 N N doub 1.29 N Y
12 N2 N3 N N sing 1.29 N Y
13 N3 C7 N C sing 1.35 N Y
14 C5 N4 C N sing 1.47 N N
15 N4 C8 N C sing 1.35 N N
16 C8 O1 C O doub 1.22 N N
17 C9 C8 C C sing 1.48 N N
18 C9 N5 C N doub 1.33 N Y
19 N5 C10 N C sing 1.32 N Y
20 C10 N6 C N doub 1.32 N Y
21 N6 C11 N C sing 1.33 N Y
22 C11 N7 C N sing 1.37 N Y
23 N7 C12 N C sing 1.37 N Y
24 C12 C13 C C doub 1.34 N Y
25 C13 C14 C C sing 1.46 N Y
26 C14 C9 C C sing 1.4 N Y
27 C11 C14 C C doub 1.42 N Y
28 C15 C4 C C sing 1.38 N Y
29 C16 C15 C C doub 1.38 N Y
30 C1 C16 C C sing 1.39 N Y
31 N3 H1 N H sing 0.97 N N
32 C5 H C H sing 1.09 N N
33 C6 H9 C H sing 1.09 N N
34 C6 H8 C H sing 1.09 N N
35 C10 H11 C H sing 1.08 N N
36 C13 H13 C H sing 1.08 N N
37 C15 H14 C H sing 1.08 N N
38 C12 H12 C H sing 1.08 N N
39 N7 H2 N H sing 0.97 N N
40 N4 H10 N H sing 0.97 N N
41 C3 H7 C H sing 1.08 N N
42 C2 H6 C H sing 1.08 N N
43 C16 H15 C H sing 1.08 N N
44 C H5 C H sing 1.09 N N
45 C H4 C H sing 1.09 N N
46 C H3 C H sing 1.09 N N