Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : A1AK3    

Bonds between two atoms of the molecule

Total Number of Bonds: 71


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C C1 C C sing 1.53 N N
2 C2 C1 C C sing 1.53 N N
3 C1 C3 C C sing 1.53 N N
4 C4 C3 C C sing 1.51 N N
5 C4 C5 C C doub 1.38 N Y
6 C5 C6 C C sing 1.39 N Y
7 C6 S C S sing 1.77 N N
8 S C7 S C sing 1.82 N N
9 C7 C8 C C sing 1.54 N N
10 C8 C9 C C sing 1.52 N N
11 O S O S doub 1.42 N N
12 O1 S O S doub 1.42 N N
13 C6 C10 C C doub 1.38 N Y
14 C9 C10 C C sing 1.5 N N
15 C10 C11 C C sing 1.39 N Y
16 C11 C12 C C doub 1.38 N Y
17 C12 C4 C C sing 1.38 N Y
18 C3 N C N sing 1.46 N N
19 N C13 N C sing 1.38 N N
20 C13 N1 C N doub 1.33 N Y
21 N1 C14 N C sing 1.32 N Y
22 C14 N2 C N doub 1.32 N Y
23 N2 C15 N C sing 1.33 N Y
24 C15 C16 C C doub 1.41 N Y
25 C13 C16 C C sing 1.41 N Y
26 C16 C17 C C sing 1.41 N Y
27 C17 C18 C C doub 1.36 N Y
28 C18 C19 C C sing 1.47 N N
29 N3 C19 N C sing 1.35 N N
30 C20 N3 C N sing 1.46 N N
31 C20 C21 C C sing 1.54 N N
32 C21 N4 C N sing 1.47 N N
33 C22 N4 C N sing 1.47 N N
34 N4 C23 N C sing 1.48 N N
35 C23 C24 C C sing 1.55 N N
36 C24 C20 C C sing 1.55 N N
37 C19 O2 C O doub 1.22 N N
38 N5 C18 N C sing 1.38 N Y
39 C15 N5 C N sing 1.37 N Y
40 N3 H22 N H sing 0.97 N N
41 C5 H10 C H sing 1.08 N N
42 C7 H12 C H sing 1.09 N N
43 C7 H11 C H sing 1.09 N N
44 C8 H13 C H sing 1.09 N N
45 C8 H14 C H sing 1.09 N N
46 C17 H21 C H sing 1.08 N N
47 C20 H1 C H sing 1.09 N N
48 C21 H24 C H sing 1.09 N N
49 C21 H23 C H sing 1.09 N N
50 C22 H25 C H sing 1.09 N N
51 C22 H26 C H sing 1.09 N N
52 C22 H27 C H sing 1.09 N N
53 C24 H31 C H sing 1.09 N N
54 C24 H30 C H sing 1.09 N N
55 C23 H29 C H sing 1.09 N N
56 C23 H28 C H sing 1.09 N N
57 N5 H2 N H sing 0.97 N N
58 C14 H20 C H sing 1.08 N N
59 N H19 N H sing 0.97 N N
60 C3 H C H sing 1.09 N N
61 C1 H6 C H sing 1.09 N N
62 C2 H7 C H sing 1.09 N N
63 C2 H9 C H sing 1.09 N N
64 C2 H8 C H sing 1.09 N N
65 C H3 C H sing 1.09 N N
66 C H4 C H sing 1.09 N N
67 C H5 C H sing 1.09 N N
68 C12 H18 C H sing 1.08 N N
69 C11 H17 C H sing 1.08 N N
70 C9 H15 C H sing 1.09 N N
71 C9 H16 C H sing 1.09 N N