Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : A1AMD    

Bonds between two atoms of the molecule

Total Number of Bonds: 58


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C C1 C C sing 1.53 N N
2 C2 C1 C C sing 1.53 N N
3 C1 C3 C C sing 1.53 N N
4 C3 N C N sing 1.46 N N
5 N C4 N C sing 1.38 N N
6 C4 N1 C N doub 1.33 N Y
7 N1 C5 N C sing 1.32 N Y
8 C5 N2 C N doub 1.32 N Y
9 N2 C6 N C sing 1.33 N Y
10 C6 N3 C N sing 1.37 N Y
11 N3 C7 N C sing 1.38 N Y
12 C7 C8 C C sing 1.48 N N
13 C8 C9 C C sing 1.41 N Y
14 C9 N4 C N doub 1.31 N Y
15 N4 N5 N N sing 1.4 N Y
16 C10 N5 C N sing 1.47 N N
17 N5 C11 N C sing 1.37 N Y
18 C8 C11 C C doub 1.4 N Y
19 C11 C12 C C sing 1.43 N N
20 C12 N6 C N trip 1.14 N N
21 C13 C7 C C doub 1.36 N Y
22 C14 C13 C C sing 1.46 N Y
23 C4 C14 C C sing 1.41 N Y
24 C6 C14 C C doub 1.41 N Y
25 C15 C3 C C sing 1.51 N N
26 C15 C16 C C doub 1.38 N Y
27 C16 C17 C C sing 1.39 N Y
28 C17 C18 C C doub 1.39 N Y
29 C18 C19 C C sing 1.39 N Y
30 C19 N7 C N doub 1.32 N Y
31 N7 C15 N C sing 1.32 N Y
32 O C19 O C sing 1.36 N N
33 C20 O C O sing 1.43 N N
34 C21 C20 C C sing 1.54 N N
35 O1 C21 O C sing 1.43 N N
36 C18 O1 C O sing 1.36 N N
37 N3 H1 N H sing 0.97 N N
38 C5 H10 C H sing 1.08 N N
39 C10 H13 C H sing 1.09 N N
40 C10 H14 C H sing 1.09 N N
41 C10 H12 C H sing 1.09 N N
42 C13 H15 C H sing 1.08 N N
43 C17 H17 C H sing 1.08 N N
44 C20 H18 C H sing 1.09 N N
45 C20 H19 C H sing 1.09 N N
46 C21 H20 C H sing 1.09 N N
47 C21 H21 C H sing 1.09 N N
48 C9 H11 C H sing 1.08 N N
49 N H9 N H sing 0.97 N N
50 C3 H C H sing 1.09 N N
51 C1 H5 C H sing 1.09 N N
52 C2 H7 C H sing 1.09 N N
53 C2 H6 C H sing 1.09 N N
54 C2 H8 C H sing 1.09 N N
55 C H3 C H sing 1.09 N N
56 C H4 C H sing 1.09 N N
57 C H2 C H sing 1.09 N N
58 C16 H16 C H sing 1.08 N N