Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : A1APA    

Bonds between two atoms of the molecule

Total Number of Bonds: 111


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C33 C34 C C doub 1.38 N Y
2 C33 C32 C C sing 1.38 N Y
3 C34 C35 C C sing 1.38 N Y
4 C32 C31 C C doub 1.38 N Y
5 C35 C30 C C doub 1.38 N Y
6 C31 C30 C C sing 1.38 N Y
7 C30 C29 C C sing 1.51 N N
8 O38 C37 O C doub 1.22 N N
9 C27 C26 C C sing 1.53 N N
10 C27 C28 C C sing 1.53 N N
11 C37 O39 C O sing 1.35 N N
12 C37 N36 C N sing 1.35 N N
13 C29 C28 C C sing 1.53 N N
14 C26 C25 C C sing 1.53 N N
15 C28 N36 C N sing 1.46 N N
16 O39 C40 O C sing 1.45 N N
17 C40 C41 C C sing 1.51 N N
18 C46 C25 C C sing 1.53 N N
19 C46 C47 C C sing 1.51 N N
20 C25 N24 C N sing 1.46 N N
21 C48 C47 C C doub 1.38 N Y
22 C48 C49 C C sing 1.38 N Y
23 C41 C42 C C doub 1.34 N Y
24 C41 S45 C S sing 1.76 N Y
25 C42 N43 C N sing 1.32 N Y
26 C47 C52 C C sing 1.38 N Y
27 C15 N16 C N sing 1.47 N N
28 C15 C14 C C sing 1.53 N N
29 C49 C50 C C doub 1.38 N Y
30 N24 C22 N C sing 1.35 N N
31 C17 C18 C C sing 1.53 N N
32 C17 N16 C N sing 1.47 N N
33 C18 O19 C O sing 1.43 N N
34 N16 C21 N C sing 1.47 N N
35 C22 C13 C C sing 1.51 N N
36 C22 O23 C O doub 1.21 N N
37 C13 C14 C C sing 1.53 N N
38 C13 N12 C N sing 1.47 N N
39 S45 C44 S C sing 1.71 N Y
40 O11 C10 O C doub 1.22 N N
41 N43 C44 N C doub 1.29 N Y
42 C52 C51 C C doub 1.38 N Y
43 C50 C51 C C sing 1.38 N Y
44 C21 C20 C C sing 1.53 N N
45 O19 C20 O C sing 1.43 N N
46 N12 C10 N C sing 1.35 N N
47 C10 N08 C N sing 1.35 N N
48 N08 C07 N C sing 1.47 N N
49 N08 C09 N C sing 1.46 N N
50 C07 C06 C C sing 1.51 N N
51 C06 N05 C N sing 1.32 N Y
52 C06 C53 C C doub 1.34 N Y
53 N05 C04 N C doub 1.29 N Y
54 C53 S54 C S sing 1.76 N Y
55 C01 C02 C C sing 1.53 N N
56 C04 S54 C S sing 1.71 N Y
57 C04 C02 C C sing 1.51 N N
58 C02 C03 C C sing 1.53 N N
59 C01 H1 C H sing 1.09 N N
60 C01 H2 C H sing 1.09 N N
61 C01 H3 C H sing 1.09 N N
62 C02 H4 C H sing 1.09 N N
63 C03 H5 C H sing 1.09 N N
64 C03 H6 C H sing 1.09 N N
65 C03 H7 C H sing 1.09 N N
66 C07 H8 C H sing 1.09 N N
67 C07 H9 C H sing 1.09 N N
68 C09 H10 C H sing 1.09 N N
69 C09 H11 C H sing 1.09 N N
70 C09 H12 C H sing 1.09 N N
71 C13 H13 C H sing 1.09 N N
72 C14 H14 C H sing 1.09 N N
73 C14 H15 C H sing 1.09 N N
74 C15 H16 C H sing 1.09 N N
75 C15 H17 C H sing 1.09 N N
76 C17 H18 C H sing 1.09 N N
77 C17 H19 C H sing 1.09 N N
78 C18 H20 C H sing 1.09 N N
79 C18 H21 C H sing 1.09 N N
80 C20 H22 C H sing 1.09 N N
81 C20 H23 C H sing 1.09 N N
82 C21 H24 C H sing 1.09 N N
83 C21 H25 C H sing 1.09 N N
84 C25 H26 C H sing 1.09 N N
85 C26 H27 C H sing 1.09 N N
86 C26 H28 C H sing 1.09 N N
87 C27 H29 C H sing 1.09 N N
88 C27 H30 C H sing 1.09 N N
89 C28 H31 C H sing 1.09 N N
90 C29 H32 C H sing 1.09 N N
91 C29 H33 C H sing 1.09 N N
92 C31 H34 C H sing 1.08 N N
93 C32 H35 C H sing 1.08 N N
94 C33 H36 C H sing 1.08 N N
95 C34 H37 C H sing 1.08 N N
96 C35 H38 C H sing 1.08 N N
97 C40 H39 C H sing 1.09 N N
98 C40 H40 C H sing 1.09 N N
99 C42 H41 C H sing 1.08 N N
100 C44 H42 C H sing 1.08 N N
101 C46 H43 C H sing 1.09 N N
102 C46 H44 C H sing 1.09 N N
103 C48 H45 C H sing 1.08 N N
104 C49 H46 C H sing 1.08 N N
105 C50 H47 C H sing 1.08 N N
106 C51 H48 C H sing 1.08 N N
107 C52 H49 C H sing 1.08 N N
108 C53 H50 C H sing 1.08 N N
109 N12 H51 N H sing 0.97 N N
110 N24 H53 N H sing 0.97 N N
111 N36 H54 N H sing 0.97 N N