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PDBeChem : Chemical Bonds
Molecule :
A5L
Bonds between two atoms of the molecule
Total Number of Bonds: 38
50
10 per page
20 per page
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Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
F
C2'
F
C
sing
1.4
N
N
2
OP2
P
O
P
doub
1.48
N
N
3
OP1
P
O
P
sing
1.61
N
N
4
P
OP3
P
O
sing
1.61
N
N
5
P
O5'
P
O
sing
1.61
N
N
6
C2
N1
C
N
doub
1.32
N
Y
7
C6
N1
C
N
sing
1.33
N
Y
8
N3
C2
N
C
sing
1.32
N
Y
9
C2
H2
C
H
sing
1.08
N
N
10
C4
N3
C
N
doub
1.33
N
Y
11
N9
C4
N
C
sing
1.37
N
Y
12
C4
C5
C
C
sing
1.41
N
Y
13
N7
C5
N
C
sing
1.35
N
Y
14
C5
C6
C
C
doub
1.4
N
Y
15
C6
N6
C
N
sing
1.38
N
N
16
HN6
N6
H
N
sing
0.97
N
N
17
N6
HN6A
N
H
sing
0.97
N
N
18
C8
N7
C
N
doub
1.3
N
Y
19
H8
C8
H
C
sing
1.08
N
N
20
N9
C8
N
C
sing
1.36
N
Y
21
C1'
N9
C
N
sing
1.47
N
N
22
C2'
C1'
C
C
sing
1.54
N
N
23
O4'
C1'
O
C
sing
1.44
N
N
24
C1'
H1'
C
H
sing
1.09
N
N
25
C3'
C2'
C
C
sing
1.55
N
N
26
C2'
H2'
C
H
sing
1.09
N
N
27
H3'
C3'
H
C
sing
1.09
N
N
28
O3'
C3'
O
C
sing
1.43
N
N
29
C3'
C4'
C
C
sing
1.55
N
N
30
O3'
HO3'
O
H
sing
0.97
N
N
31
C5'
C4'
C
C
sing
1.53
N
N
32
H4'
C4'
H
C
sing
1.09
N
N
33
C4'
O4'
C
O
sing
1.45
N
N
34
H5'
C5'
H
C
sing
1.09
N
N
35
O5'
C5'
O
C
sing
1.43
N
N
36
C5'
H5'A
C
H
sing
1.09
N
N
37
OP1
HOP1
O
H
sing
0.97
N
N
38
OP3
HOP3
O
H
sing
0.97
N
N