Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : A5L    

Bonds between two atoms of the molecule

Total Number of Bonds: 38


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 F C2' F C sing 1.4 N N
2 OP2 P O P doub 1.48 N N
3 OP1 P O P sing 1.61 N N
4 P OP3 P O sing 1.61 N N
5 P O5' P O sing 1.61 N N
6 C2 N1 C N doub 1.32 N Y
7 C6 N1 C N sing 1.33 N Y
8 N3 C2 N C sing 1.32 N Y
9 C2 H2 C H sing 1.08 N N
10 C4 N3 C N doub 1.33 N Y
11 N9 C4 N C sing 1.37 N Y
12 C4 C5 C C sing 1.41 N Y
13 N7 C5 N C sing 1.35 N Y
14 C5 C6 C C doub 1.4 N Y
15 C6 N6 C N sing 1.38 N N
16 HN6 N6 H N sing 0.97 N N
17 N6 HN6A N H sing 0.97 N N
18 C8 N7 C N doub 1.3 N Y
19 H8 C8 H C sing 1.08 N N
20 N9 C8 N C sing 1.36 N Y
21 C1' N9 C N sing 1.47 N N
22 C2' C1' C C sing 1.54 N N
23 O4' C1' O C sing 1.44 N N
24 C1' H1' C H sing 1.09 N N
25 C3' C2' C C sing 1.55 N N
26 C2' H2' C H sing 1.09 N N
27 H3' C3' H C sing 1.09 N N
28 O3' C3' O C sing 1.43 N N
29 C3' C4' C C sing 1.55 N N
30 O3' HO3' O H sing 0.97 N N
31 C5' C4' C C sing 1.53 N N
32 H4' C4' H C sing 1.09 N N
33 C4' O4' C O sing 1.45 N N
34 H5' C5' H C sing 1.09 N N
35 O5' C5' O C sing 1.43 N N
36 C5' H5'A C H sing 1.09 N N
37 OP1 HOP1 O H sing 0.97 N N
38 OP3 HOP3 O H sing 0.97 N N