Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : A5S    

Bonds between two atoms of the molecule

Total Number of Bonds: 54


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O25 P24 O P doub 1.48 N N
2 O23 P24 O P sing 1.61 N N
3 O26 P24 O P sing 1.61 N N
4 P24 O27 P O sing 1.61 N N
5 O27 C28 O C sing 1.43 N N
6 C28 C29 C C sing 1.53 N N
7 C31 C29 C C sing 1.53 N N
8 C29 C30 C C sing 1.53 N N
9 C29 C32 C C sing 1.53 N N
10 C32 O33 C O sing 1.43 N N
11 C32 C34 C C sing 1.51 N N
12 O35 C34 O C doub 1.21 N N
13 C34 N36 C N sing 1.35 N N
14 N36 C37 N C sing 1.46 N N
15 C37 C38 C C sing 1.53 N N
16 C38 C39 C C sing 1.51 N N
17 O40 C39 O C doub 1.21 N N
18 C39 N41 C N sing 1.35 N N
19 N41 C42 N C sing 1.46 N N
20 C42 C43 C C sing 1.53 N N
21 C43 S44 C S sing 1.81 N N
22 S44 C1 S C sing 1.71 N N
23 O5 C1 O C doub 1.21 N N
24 C1 C2 C C sing 1.51 N N
25 C4 C3 C C sing 1.51 N N
26 C2 C3 C C sing 1.51 N N
27 C3 O1 C O doub 1.21 N N
28 C2 H1 C H sing 1.09 N N
29 C2 H2 C H sing 1.09 N N
30 C4 H3 C H sing 1.09 N N
31 C4 H4 C H sing 1.09 N N
32 C4 H5 C H sing 1.09 N N
33 N41 H6 N H sing 0.97 N N
34 C42 H7 C H sing 1.09 N N
35 C42 H8 C H sing 1.09 N N
36 C43 H9 C H sing 1.09 N N
37 C43 H10 C H sing 1.09 N N
38 C38 H11 C H sing 1.09 N N
39 C38 H12 C H sing 1.09 N N
40 C37 H13 C H sing 1.09 N N
41 C37 H14 C H sing 1.09 N N
42 N36 H15 N H sing 0.97 N N
43 C32 H16 C H sing 1.09 N N
44 O33 H17 O H sing 0.97 N N
45 C31 H18 C H sing 1.09 N N
46 C31 H19 C H sing 1.09 N N
47 C31 H20 C H sing 1.09 N N
48 C30 H21 C H sing 1.09 N N
49 C30 H22 C H sing 1.09 N N
50 C30 H23 C H sing 1.09 N N
51 C28 H24 C H sing 1.09 N N
52 C28 H25 C H sing 1.09 N N
53 O23 H26 O H sing 0.97 N N
54 O26 H27 O H sing 0.97 N N