Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : AAT    

Bonds between two atoms of the molecule

Total Number of Bonds: 60


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N CA N C sing 1.47 N N
2 N HN1 N H sing 1.01 N N
3 N HN2 N H sing 1.01 N N
4 CA CB C C sing 1.51 N N
5 CA HCA1 C H sing 1.09 N N
6 CA HCA2 C H sing 1.09 N N
7 CB CG C C doub 1.32 E N
8 CB HCB C H sing 1.08 N N
9 CG SD C S sing 1.76 N N
10 CG C11 C C sing 1.51 N N
11 SD C5' S C sing 1.81 N N
12 C5' C4' C C sing 1.53 N N
13 C5' H5'1 C H sing 1.09 N N
14 C5' H5'2 C H sing 1.09 N N
15 C4' O4' C O sing 1.44 N N
16 C4' C3' C C sing 1.54 N N
17 C4' H4'C C H sing 1.09 N N
18 O4' C1' O C sing 1.44 N N
19 C3' O3' C O sing 1.43 N N
20 C3' C2' C C sing 1.55 N N
21 C3' H3'C C H sing 1.09 N N
22 O3' H3'O O H sing 0.97 N N
23 C2' O2' C O sing 1.43 N N
24 C2' C1' C C sing 1.55 N N
25 C2' H2'C C H sing 1.09 N N
26 O2' H2'O O H sing 0.97 N N
27 C1' N9 C N sing 1.46 N N
28 C1' H1'C C H sing 1.09 N N
29 N9 C8 N C sing 1.36 N Y
30 N9 C4 N C sing 1.37 N Y
31 C8 N7 C N doub 1.3 N Y
32 C8 HC8 C H sing 1.08 N N
33 N7 C5 N C sing 1.36 N Y
34 C5 C6 C C doub 1.4 N Y
35 C5 C4 C C sing 1.4 N Y
36 C6 N6 C N sing 1.38 N N
37 C6 N1 C N sing 1.33 N Y
38 N6 HN61 N H sing 0.97 N N
39 N6 HN62 N H sing 0.97 N N
40 N1 C2 N C doub 1.32 N Y
41 C2 N3 C N sing 1.32 N Y
42 C2 HC2 C H sing 1.08 N N
43 N3 C4 N C doub 1.33 N Y
44 C11 C12 C C sing 1.53 N N
45 C11 H111 C H sing 1.09 N N
46 C11 H112 C H sing 1.09 N N
47 C12 C13 C C sing 1.53 N N
48 C12 H121 C H sing 1.09 N N
49 C12 H122 C H sing 1.09 N N
50 C13 C14 C C sing 1.53 N N
51 C13 H131 C H sing 1.09 N N
52 C13 H132 C H sing 1.09 N N
53 C14 C15 C C sing 1.53 N N
54 C14 H141 C H sing 1.09 N N
55 C14 H142 C H sing 1.09 N N
56 C15 N16 C N sing 1.47 N N
57 C15 H151 C H sing 1.09 N N
58 C15 H152 C H sing 1.09 N N
59 N16 H161 N H sing 1.01 N N
60 N16 H162 N H sing 1.01 N N