Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : AIF    

Bonds between two atoms of the molecule

Total Number of Bonds: 38


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C4 C5 C C sing 1.42 N N
2 C4 N3 C N sing 1.35 N N
3 C4 O4 C O doub 1.22 N N
4 C5 C6 C C doub 1.38 N N
5 C5 N5 C N sing 1.4 N N
6 C6 N1 C N sing 1.38 N N
7 C6 N1' C N sing 1.36 N N
8 N1 C2 N C sing 1.35 N N
9 N3 C2 N C sing 1.34 N N
10 O2 C2 O C doub 1.22 N N
11 O1P P O P sing 1.61 N N
12 P O3P P O sing 1.61 N N
13 P O2P P O doub 1.48 N N
14 P O5' P O sing 1.61 N N
15 O5' C5' O C sing 1.43 N N
16 C5' C4' C C sing 1.53 N N
17 C4' O4' C O sing 1.43 N N
18 C4' C3' C C sing 1.53 N N
19 C3' O3' C O sing 1.43 N N
20 C3' C2' C C sing 1.53 N N
21 C2' O2' C O sing 1.43 N N
22 C2' C1' C C sing 1.51 N N
23 C1' N1' C N doub 1.3 N N
24 N1 HN1 N H sing 0.97 N N
25 N3 HN3 N H sing 0.97 N N
26 N5 HN5 N H sing 0.97 N N
27 N5 HN5A N H sing 0.97 N N
28 O1P HO1P O H sing 0.97 N N
29 O3P HO3P O H sing 0.97 N N
30 C5' H5' C H sing 1.09 N N
31 C5' H5'A C H sing 1.09 N N
32 C4' H4' C H sing 1.09 N N
33 O4' HO4' O H sing 0.97 N N
34 C3' H3' C H sing 1.09 N N
35 O3' HO3' O H sing 0.97 N N
36 C2' H2' C H sing 1.09 N N
37 O2' HO2' O H sing 0.97 N N
38 C1' H1' C H sing 1.08 N N