Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : B1B    

Bonds between two atoms of the molecule

Total Number of Bonds: 41


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3 N3 O N sing 1.42 N N
2 N3 C14 N C sing 1.35 N N
3 O2 C14 O C doub 1.21 N N
4 C14 C9 C C sing 1.51 N N
5 C12 C11 C C sing 1.53 N N
6 C11 C13 C C sing 1.53 N N
7 C11 C10 C C sing 1.53 N N
8 C9 C10 C C sing 1.53 N N
9 C9 N2 C N sing 1.47 N N
10 N2 C8 N C sing 1.35 N N
11 C8 O C O doub 1.22 N N
12 C8 N C N sing 1.35 N N
13 N CA N C sing 1.46 N N
14 CA CB C C sing 1.51 N N
15 CG2 CB C C doub 1.38 N Y
16 CG2 C4 C C sing 1.38 N Y
17 CB CG1 C C sing 1.38 N Y
18 C4 C3 C C doub 1.38 N Y
19 CG1 CL1 C CL sing 1.74 N N
20 CG1 CD1 C C doub 1.38 N Y
21 C3 CD1 C C sing 1.38 N Y
22 CD1 H1 C H sing 1.08 N N
23 C3 H2 C H sing 1.08 N N
24 C4 H3 C H sing 1.08 N N
25 CG2 H4 C H sing 1.08 N N
26 CA H5 C H sing 1.09 N N
27 CA H6 C H sing 1.09 N N
28 N H7 N H sing 0.97 N N
29 N2 H8 N H sing 0.97 N N
30 C9 H9 C H sing 1.09 N N
31 C10 H10 C H sing 1.09 N N
32 C10 H11 C H sing 1.09 N N
33 C11 H12 C H sing 1.09 N N
34 C12 H13 C H sing 1.09 N N
35 C12 H14 C H sing 1.09 N N
36 C12 H15 C H sing 1.09 N N
37 C13 H16 C H sing 1.09 N N
38 C13 H17 C H sing 1.09 N N
39 C13 H18 C H sing 1.09 N N
40 N3 H19 N H sing 0.97 N N
41 O3 H20 O H sing 0.97 N N