Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : B5P    

Bonds between two atoms of the molecule

Total Number of Bonds: 58


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C sing 1.53 N N
2 C2 C3 C C sing 1.53 N N
3 C2 C4 C C sing 1.53 N N
4 C5 C4 C C sing 1.53 N N
5 C5 N1 C N sing 1.47 N N
6 C6 C7 C C sing 1.46 N N
7 C6 O1 C O doub 1.22 N N
8 C7 C12 C C sing 1.47 N N
9 N1 C6 N C sing 1.35 N N
10 N2 C8 N C sing 1.37 N N
11 C8 O2 C O sing 1.35 N N
12 C8 C7 C C doub 1.39 N N
13 N3 C11 N C doub 1.32 N Y
14 C9 N2 C N sing 1.38 N Y
15 C10 N3 C N sing 1.34 N Y
16 C10 C9 C C doub 1.34 N Y
17 C11 N2 C N sing 1.36 N Y
18 C11 N1 C N sing 1.38 N N
19 C12 N4 C N doub 1.3 N N
20 C12 N5 C N sing 1.36 N N
21 C13 C19 C C doub 1.38 N Y
22 C14 C15 C C doub 1.39 N Y
23 C14 C13 C C sing 1.39 N Y
24 C15 C16 C C sing 1.38 N Y
25 S2 C18 S C sing 1.81 N N
26 S2 O6 S O doub 1.42 N N
27 O5 S2 O S doub 1.42 N N
28 N6 S2 N S sing 1.66 N N
29 C17 N6 C N sing 1.4 N N
30 C19 C17 C C sing 1.39 N Y
31 S1 O3 S O doub 1.42 N N
32 S1 O4 S O doub 1.42 N N
33 S1 C13 S C sing 1.76 N N
34 N4 S1 N S sing 1.66 N N
35 C16 C17 C C doub 1.39 N Y
36 N5 C14 N C sing 1.4 N N
37 C1 H11 C H sing 1.09 N N
38 C1 H21 C H sing 1.09 N N
39 C1 H31 C H sing 1.09 N N
40 C2 H2 C H sing 1.09 N N
41 C3 H13 C H sing 1.09 N N
42 C3 H23 C H sing 1.09 N N
43 C3 H33 C H sing 1.09 N N
44 C4 H14 C H sing 1.09 N N
45 C4 H24 C H sing 1.09 N N
46 C5 H15 C H sing 1.09 N N
47 C5 H25 C H sing 1.09 N N
48 O2 H12 O H sing 0.97 N N
49 C9 H9 C H sing 1.08 N N
50 C10 H10 C H sing 1.08 N N
51 C15 H15A C H sing 1.08 N N
52 C18 H118 C H sing 1.09 N N
53 C18 H218 C H sing 1.09 N N
54 C18 H318 C H sing 1.09 N N
55 N6 HN6 N H sing 0.97 N N
56 C19 H19 C H sing 1.08 N N
57 C16 H16 C H sing 1.08 N N
58 N5 H22 N H sing 0.97 N N