Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : B5S    

Bonds between two atoms of the molecule

Total Number of Bonds: 58


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 O2 C O sing 1.43 N N
2 C1 H1 C H sing 1.09 N N
3 C1 H1A C H sing 1.09 N N
4 C1 H1B C H sing 1.09 N N
5 O2 C3 O C sing 1.36 N N
6 C3 C4 C C doub 1.39 N Y
7 C3 C33 C C sing 1.39 N Y
8 C4 C5 C C sing 1.39 N Y
9 C4 H4 C H sing 1.08 N N
10 C5 O6 C O sing 1.36 N N
11 C5 C7 C C doub 1.39 N Y
12 O6 HO6 O H sing 0.97 N N
13 C7 C8 C C sing 1.39 N Y
14 C7 H7 C H sing 1.08 N N
15 C8 N9 C N sing 1.4 N N
16 C8 C33 C C doub 1.39 N Y
17 N9 C10 N C sing 1.39 N N
18 N9 HN9 N H sing 0.97 N N
19 C10 C11 C C doub 1.39 N Y
20 C10 C32 C C sing 1.39 N Y
21 C11 C12 C C sing 1.37 N Y
22 C11 H11 C H sing 1.08 N N
23 C12 C13 C C doub 1.4 N Y
24 C12 H12 C H sing 1.08 N N
25 C13 C14 C C sing 1.47 N N
26 C13 C23 C C sing 1.4 N Y
27 C14 O15 C O doub 1.22 N N
28 C14 N16 C N sing 1.35 N N
29 N16 C17 N C sing 1.4 N N
30 N16 HN16 N H sing 0.97 N N
31 C17 C18 C C doub 1.39 N Y
32 C17 C22 C C sing 1.39 N Y
33 C18 C19 C C sing 1.38 N Y
34 C18 H18 C H sing 1.08 N N
35 C19 C20 C C doub 1.38 N Y
36 C19 H19 C H sing 1.08 N N
37 C20 C21 C C sing 1.38 N Y
38 C20 H20 C H sing 1.08 N N
39 C21 C22 C C doub 1.38 N Y
40 C21 H21 C H sing 1.08 N N
41 C22 H22 C H sing 1.08 N N
42 C23 O24 C O sing 1.36 N N
43 C23 C32 C C doub 1.38 N Y
44 O24 C25 O C sing 1.43 N N
45 C25 C26 C C sing 1.53 N N
46 C25 H25 C H sing 1.09 N N
47 C25 H25A C H sing 1.09 N N
48 C26 C27 C C sing 1.53 N N
49 C26 H26 C H sing 1.09 N N
50 C26 H26A C H sing 1.09 N N
51 C27 N28 C N sing 1.47 N N
52 C27 H27 C H sing 1.09 N N
53 C27 H27A C H sing 1.09 N N
54 N28 HN28 N H sing 1.01 N N
55 N28 HN2A N H sing 1.01 N N
56 N28 HN2B N H sing 1.01 N N
57 C32 H32 C H sing 1.08 N N
58 C33 H33 C H sing 1.08 N N