Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : BGR    

Bonds between two atoms of the molecule

Total Number of Bonds: 41


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P BP P B sing 1.88 N N
2 P O5' P O sing 1.61 N N
3 P OP1 P O doub 1.48 N N
4 P OP2 P O sing 1.61 N N
5 N1 C2 N C sing 1.36 N N
6 N1 C6 N C sing 1.35 N N
7 N1 HN1 N H sing 0.97 N N
8 C2 N2 C N sing 1.37 N N
9 C2 N3 C N doub 1.31 N N
10 N2 HN2 N H sing 0.97 N N
11 N2 HN2A N H sing 0.97 N N
12 N3 C4 N C sing 1.34 N N
13 C4 C5 C C doub 1.4 N Y
14 C4 N9 C N sing 1.37 N Y
15 C5 C6 C C sing 1.41 N N
16 C5 N7 C N sing 1.36 N Y
17 C6 O6 C O doub 1.22 N N
18 N7 C8 N C doub 1.3 N Y
19 C8 N9 C N sing 1.36 N Y
20 C8 H8 C H sing 1.08 N N
21 N9 C1' N C sing 1.46 N N
22 BP H1BP B H sing 1.21 N N
23 BP H2BP B H sing 1.21 N N
24 BP H3BP B H sing 1.21 N N
25 C1' C2' C C sing 1.54 N N
26 C1' O4' C O sing 1.44 N N
27 C1' H1' C H sing 1.09 N N
28 C2' C3' C C sing 1.55 N N
29 C2' H2' C H sing 1.09 N N
30 C2' H2'A C H sing 1.09 N N
31 C3' O3' C O sing 1.43 N N
32 C3' C4' C C sing 1.55 N N
33 C3' H3' C H sing 1.09 N N
34 C4' O4' C O sing 1.44 N N
35 C4' C5' C C sing 1.53 N N
36 C4' H4' C H sing 1.09 N N
37 C5' O5' C O sing 1.43 N N
38 C5' H5' C H sing 1.09 N N
39 C5' H5'A C H sing 1.09 N N
40 O3' H15 O H sing 0.97 N N
41 OP2 H16 O H sing 0.97 N N