Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : BSJ    

Bonds between two atoms of the molecule

Total Number of Bonds: 140


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O56 C66 O C sing 1.42 N N
2 C66 C65 C C sing 1.54 N N
3 C66 C61 C C sing 1.56 N N
4 C65 O55 C O sing 1.45 N N
5 C65 C64 C C sing 1.55 N N
6 C64 N53 C N sing 1.48 N N
7 C64 C63 C C sing 1.55 N N
8 C63 C62 C C sing 1.55 N N
9 C62 N52 C N sing 1.48 N N
10 C62 C61 C C sing 1.54 N N
11 C61 O54 C O sing 1.44 N N
12 O54 C60 O C sing 1.45 N N
13 C60 O53 C O sing 1.46 N N
14 C60 C55 C C sing 1.54 N N
15 O53 C59 O C sing 1.44 N N
16 C55 N50 C N sing 1.48 N N
17 C55 C56 C C sing 1.54 N N
18 C56 O51 C O sing 1.43 N N
19 C56 C57 C C sing 1.54 N N
20 C57 O52 C O sing 1.42 N N
21 C57 C59 C C sing 1.55 N N
22 C59 C58 C C sing 1.54 N N
23 C58 N51 C N sing 1.47 N N
24 N51 C54 N C sing 1.34 N N
25 C54 O57 C O doub 1.24 N N
26 C54 C53 C C sing 1.55 N N
27 C53 C52 C C sing 1.54 N N
28 C52 S1 C S sing 1.83 N N
29 S1 C51 S C sing 1.81 N N
30 C51 C50 C C sing 1.36 N N
31 C50 N49 C N doub 1.31 N N
32 N49 C49 N C sing 1.31 N N
33 C49 O49 C O doub 1.23 N N
34 C49 C48 C C sing 1.51 N N
35 C48 C47 C C sing 1.54 N N
36 C47 N46 C N sing 1.49 N N
37 N46 C46 N C sing 1.32 N N
38 C46 O46 C O doub 1.23 N N
39 C46 C45 C C sing 1.53 N N
40 C45 O45 C O sing 1.46 N N
41 C45 C42 C C sing 1.56 N N
42 C42 C43 C C sing 1.55 N N
43 C42 C44 C C sing 1.58 N N
44 C42 C41 C C sing 1.55 N N
45 C41 O33 C O sing 1.45 N N
46 O33 P3 O P sing 1.59 N N
47 P3 O31 P O doub 1.47 N N
48 P3 O32 P O sing 1.49 N N
49 P3 O24 P O sing 1.64 N N
50 O24 P2 O P sing 1.65 N N
51 P2 O22 P O doub 1.47 N N
52 P2 O23 P O sing 1.49 N N
53 P2 O21 P O sing 1.61 N N
54 O21 C15 O C sing 1.45 N N
55 C15 C14 C C sing 1.52 N N
56 C14 O17 C O sing 1.47 N N
57 C14 C13 C C sing 1.54 N N
58 O17 C11 O C sing 1.39 N N
59 C13 O13 C O sing 1.45 N N
60 C13 C12 C C sing 1.51 N N
61 O13 P1 O P sing 1.71 N N
62 P1 O16 P O sing 1.63 N N
63 P1 O14 P O sing 1.65 N N
64 P1 O15 P O doub 1.48 N N
65 C12 O12 C O sing 1.43 N N
66 C12 C11 C C sing 1.58 N N
67 C11 N1 C N sing 1.51 N N
68 N1 C1 N C sing 1.34 N Y
69 N1 C5 N C sing 1.33 N Y
70 C1 N2 C N doub 1.33 N Y
71 N2 C2 N C sing 1.32 N Y
72 C2 C5 C C sing 1.39 N Y
73 C2 C3 C C doub 1.4 N Y
74 C5 N5 C N doub 1.35 N Y
75 N5 C4 N C sing 1.33 N Y
76 C4 N4 C N doub 1.33 N Y
77 N4 C3 N C sing 1.34 N Y
78 C3 N3 C N sing 1.34 N N
79 O56 H56 O H sing 0.95 N N
80 C66 H66 C H sing 1.1 N N
81 C65 H65 C H sing 1.1 N N
82 C61 H61 C H sing 1.1 N N
83 O55 H55 O H sing 0.95 N N
84 C64 H64 C H sing 1.1 N N
85 N53 H531 N H sing 1.0 N N
86 N53 H532 N H sing 1.0 N N
87 C63 H631 C H sing 1.1 N N
88 C63 H632 C H sing 1.1 N N
89 C62 H62 C H sing 1.1 N N
90 N52 H521 N H sing 1.0 N N
91 N52 H522 N H sing 1.0 N N
92 C60 H60 C H sing 1.1 N N
93 C55 HA C H sing 1.1 N N
94 C59 H59 C H sing 1.1 N N
95 N50 H501 N H sing 1.0 N N
96 N50 H502 N H sing 1.0 N N
97 C56 HB C H sing 1.1 N N
98 O51 H51 O H sing 0.95 N N
99 C57 H57 C H sing 1.1 N N
100 O52 H52 O H sing 0.95 N N
101 C58 H581 C H sing 1.1 N N
102 C58 H582 C H sing 1.1 N N
103 N51 HC N H sing 1.0 N N
104 C53 HA1 C H sing 1.1 N N
105 C53 HB2 C H sing 1.1 N N
106 C52 HB1 C H sing 1.1 N N
107 C52 HC2 C H sing 1.1 N N
108 C51 H511 C H sing 1.1 N N
109 C51 H512 C H sing 1.1 N N
110 C50 H50 C H sing 1.08 N N
111 C48 H481 C H sing 1.1 N N
112 C48 H482 C H sing 1.1 N N
113 C47 H471 C H sing 1.1 N N
114 C47 H472 C H sing 1.1 N N
115 N46 H46 N H sing 1.0 N N
116 C45 H45 C H sing 1.1 N N
117 O45 HD O H sing 0.95 N N
118 C43 H431 C H sing 1.1 N N
119 C43 H432 C H sing 1.1 N N
120 C43 H433 C H sing 1.1 N N
121 C44 H441 C H sing 1.1 N N
122 C44 H442 C H sing 1.1 N N
123 C44 H443 C H sing 1.1 N N
124 C41 H411 C H sing 1.1 N N
125 C41 H412 C H sing 1.1 N N
126 O32 H32 O H sing 0.95 N N
127 O23 H23 O H sing 0.95 N N
128 C15 H151 C H sing 1.1 N N
129 C15 H152 C H sing 1.1 N N
130 C14 H14 C H sing 1.1 N N
131 C13 H13 C H sing 1.1 N N
132 C11 H11 C H sing 1.1 N N
133 C12 H12 C H sing 1.1 N N
134 O16 H16 O H sing 0.95 N N
135 O14 HE O H sing 0.95 N N
136 O12 HF O H sing 0.95 N N
137 C1 H1 C H sing 1.08 N N
138 C4 H4 C H sing 1.08 N N
139 N3 H3N1 N H sing 1.0 N N
140 N3 H3N2 N H sing 1.0 N N