Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : C5V    

Bonds between two atoms of the molecule

Total Number of Bonds: 53


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C15 C14 C C doub 1.39 N Y
2 C15 C16 C C sing 1.38 N Y
3 C14 C11 C C sing 1.39 N Y
4 C16 C17 C C doub 1.39 N Y
5 C11 C12 C C doub 1.41 N Y
6 C11 C10 C C sing 1.48 N N
7 C17 C12 C C sing 1.39 N Y
8 O18 C10 O C doub 1.21 N N
9 C12 C13 C C sing 1.48 N N
10 C10 N9 C N sing 1.35 N N
11 C13 N9 C N sing 1.35 N N
12 C13 O19 C O doub 1.21 N N
13 N9 C1 N C sing 1.46 N N
14 C7 C6 C C doub 1.38 N Y
15 C7 C2 C C sing 1.38 N Y
16 C6 C5 C C sing 1.39 N Y
17 C1 C2 C C sing 1.51 N N
18 C2 C3 C C doub 1.38 N Y
19 C5 N8 C N sing 1.4 N N
20 C5 C4 C C doub 1.39 N Y
21 N8 C20 N C sing 1.35 N N
22 C3 C4 C C sing 1.38 N Y
23 C20 C21 C C sing 1.51 N N
24 C20 O22 C O doub 1.21 N N
25 C21 C24 C C sing 1.53 N N
26 C21 C23 C C sing 1.53 N N
27 C30 C29 C C doub 1.39 N Y
28 C30 C25 C C sing 1.39 N Y
29 C29 C28 C C sing 1.38 N Y
30 C24 C23 C C sing 1.53 N N
31 C23 C25 C C sing 1.51 N N
32 C25 C26 C C doub 1.38 N Y
33 C28 N27 C N doub 1.32 N Y
34 C26 N27 C N sing 1.32 N Y
35 C1 H1 C H sing 1.09 N N
36 C1 H2 C H sing 1.09 N N
37 C3 H3 C H sing 1.08 N N
38 C14 H4 C H sing 1.08 N N
39 C15 H5 C H sing 1.08 N N
40 C16 H6 C H sing 1.08 N N
41 C17 H7 C H sing 1.08 N N
42 C21 H8 C H sing 1.09 N N
43 C23 H9 C H sing 1.09 N N
44 C24 H10 C H sing 1.09 N N
45 C24 H11 C H sing 1.09 N N
46 C26 H12 C H sing 1.08 N N
47 C28 H13 C H sing 1.08 N N
48 C29 H14 C H sing 1.08 N N
49 C30 H15 C H sing 1.08 N N
50 C4 H16 C H sing 1.08 N N
51 C6 H17 C H sing 1.08 N N
52 C7 H18 C H sing 1.08 N N
53 N8 H19 N H sing 0.97 N N