Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
C9L
Bonds between two atoms of the molecule
Total Number of Bonds: 39
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
C01
C02
C
C
sing
1.53
N
N
2
C11
N10
C
N
sing
1.47
N
N
3
C02
C03
C
C
sing
1.51
N
N
4
N10
C09
N
C
sing
1.39
N
N
5
C17
C16
C
C
sing
1.53
N
N
6
C17
N12
C
N
sing
1.47
N
N
7
C16
C15
C
C
sing
1.53
N
N
8
C03
C09
C
C
doub
1.39
N
Y
9
C03
C04
C
C
sing
1.39
N
Y
10
C09
N08
C
N
sing
1.33
N
Y
11
C04
N12
C
N
sing
1.39
N
N
12
C04
N05
C
N
doub
1.33
N
Y
13
N08
C06
N
C
doub
1.32
N
Y
14
N12
C13
N
C
sing
1.47
N
N
15
C15
C14
C
C
sing
1.53
N
N
16
N05
C06
N
C
sing
1.32
N
Y
17
C06
N07
C
N
sing
1.38
N
N
18
C13
C14
C
C
sing
1.53
N
N
19
C11
H1
C
H
sing
1.09
N
N
20
C11
H2
C
H
sing
1.09
N
N
21
C11
H3
C
H
sing
1.09
N
N
22
C13
H4
C
H
sing
1.09
N
N
23
C13
H5
C
H
sing
1.09
N
N
24
C15
H6
C
H
sing
1.09
N
N
25
C15
H7
C
H
sing
1.09
N
N
26
C16
H8
C
H
sing
1.09
N
N
27
C16
H9
C
H
sing
1.09
N
N
28
C17
H10
C
H
sing
1.09
N
N
29
C17
H11
C
H
sing
1.09
N
N
30
C01
H12
C
H
sing
1.09
N
N
31
C01
H13
C
H
sing
1.09
N
N
32
C01
H14
C
H
sing
1.09
N
N
33
C02
H15
C
H
sing
1.09
N
N
34
C02
H16
C
H
sing
1.09
N
N
35
N07
H17
N
H
sing
0.97
N
N
36
N07
H18
N
H
sing
0.97
N
N
37
N10
H19
N
H
sing
0.97
N
N
38
C14
H20
C
H
sing
1.09
N
N
39
C14
H21
C
H
sing
1.09
N
N