Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : CK9    

Bonds between two atoms of the molecule

Total Number of Bonds: 55


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O27 C24 O C sing 1.36 N N
2 O27 H27 O H sing 0.97 N N
3 C24 C23 C C doub 1.39 N Y
4 C24 C19 C C sing 1.39 N Y
5 C23 C22 C C sing 1.38 N Y
6 C23 H23 C H sing 1.08 N N
7 C22 C21 C C doub 1.38 N Y
8 C22 H22 C H sing 1.08 N N
9 C21 C20 C C sing 1.38 N Y
10 C21 H21 C H sing 1.08 N N
11 C20 C19 C C doub 1.38 N Y
12 C20 H20 C H sing 1.08 N N
13 C19 C18 C C sing 1.51 N N
14 C18 N17 C N sing 1.47 N N
15 C18 H181 C H sing 1.09 N N
16 C18 H182 C H sing 1.09 N N
17 N17 C4 N C sing 1.38 N N
18 N17 H17 N H sing 0.97 N N
19 C4 C5 C C sing 1.41 N Y
20 C4 N1 C N doub 1.33 N Y
21 C5 N9 C N sing 1.36 N Y
22 C5 C6 C C doub 1.4 N Y
23 N9 C8 N C doub 1.3 N Y
24 C8 N7 C N sing 1.36 N Y
25 C8 H8 C H sing 1.08 N N
26 C6 N7 C N sing 1.37 N Y
27 C6 N3 C N sing 1.33 N Y
28 N7 C10 N C sing 1.46 N N
29 C10 C12 C C sing 1.53 N N
30 C10 C11 C C sing 1.53 N N
31 C10 H10 C H sing 1.09 N N
32 C12 H121 C H sing 1.09 N N
33 C12 H122 C H sing 1.09 N N
34 C12 H123 C H sing 1.09 N N
35 C11 H111 C H sing 1.09 N N
36 C11 H112 C H sing 1.09 N N
37 C11 H113 C H sing 1.09 N N
38 N3 C2 N C doub 1.32 N Y
39 C2 N1 C N sing 1.33 N Y
40 C2 N13 C N sing 1.39 N N
41 N13 C14 N C sing 1.46 N N
42 N13 H13 N H sing 0.97 N N
43 C14 C25 C C sing 1.53 N N
44 C14 C15 C C sing 1.53 N N
45 C14 H14 C H sing 1.09 N N
46 C25 C26 C C sing 1.53 N N
47 C25 H251 C H sing 1.09 N N
48 C25 H252 C H sing 1.09 N N
49 C26 H261 C H sing 1.09 N N
50 C26 H262 C H sing 1.09 N N
51 C26 H263 C H sing 1.09 N N
52 C15 O16 C O sing 1.43 N N
53 C15 H151 C H sing 1.09 N N
54 C15 H152 C H sing 1.09 N N
55 O16 H16 O H sing 0.97 N N