Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : CO6    

Bonds between two atoms of the molecule

Total Number of Bonds: 97


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1A C2A N C sing 1.36 N Y
2 N1A C6A N C doub 1.35 N Y
3 C2A N3A C N doub 1.35 N Y
4 C2A H2 C H sing 1.08 N N
5 N3A C4A N C sing 1.34 N Y
6 C4A C5A C C doub 1.39 N Y
7 C4A N9A C N sing 1.37 N Y
8 C5A C6A C C sing 1.39 N Y
9 C5A N7A C N sing 1.37 N Y
10 C6A N6A C N sing 1.41 N N
11 N6A HN61 N H sing 1.0 N N
12 N6A HN62 N H sing 1.0 N N
13 N7A C8A N C doub 1.32 N Y
14 C8A N9A C N sing 1.37 N Y
15 C8A H8 C H sing 1.08 N N
16 N9A C1B N C sing 1.46 N N
17 C1B C2B C C sing 1.53 N N
18 C1B O4B C O sing 1.44 N N
19 C1B H1' C H sing 1.1 N N
20 C2B C3B C C sing 1.52 N N
21 C2B O2B C O sing 1.43 N N
22 C2B H2' C H sing 1.09 N N
23 O2B H1 O H sing 0.97 N N
24 C3B C4B C C sing 1.52 N N
25 C3B O3B C O sing 1.41 N N
26 C3B H3' C H sing 1.1 N N
27 O3B P3B O P sing 1.61 N N
28 P3B O7A P O doub 1.5 N N
29 P3B O8A P O sing 1.62 N N
30 P3B O9A P O sing 1.62 N N
31 O8A HO8 O H sing 0.98 N N
32 O9A HO9 O H sing 0.98 N N
33 C4B C5B C C sing 1.52 N N
34 C4B O4B C O sing 1.44 N N
35 C4B H4' C H sing 1.1 N N
36 C5B O5B C O sing 1.42 N N
37 C5B H5'1 C H sing 1.09 N N
38 C5B H5'2 C H sing 1.09 N N
39 O5B P1A O P sing 1.62 N N
40 P1A O1A P O doub 1.5 N N
41 P1A O2A P O sing 1.62 N N
42 P1A O3A P O sing 1.62 N N
43 O2A HO2 O H sing 0.98 N N
44 O3A P2A O P sing 1.62 N N
45 P2A O4A P O doub 1.5 N N
46 P2A O5A P O sing 1.62 N N
47 P2A O6A P O sing 1.61 N N
48 O5A HO5 O H sing 0.98 N N
49 O6A CCP O C sing 1.42 N N
50 CBP CAP C C sing 1.56 N N
51 CBP CCP C C sing 1.55 N N
52 CBP CDP C C sing 1.55 N N
53 CBP CEP C C sing 1.54 N N
54 CCP H121 C H sing 1.1 N N
55 CCP H122 C H sing 1.09 N N
56 CDP H131 C H sing 1.1 N N
57 CDP H132 C H sing 1.1 N N
58 CDP H133 C H sing 1.1 N N
59 CEP H141 C H sing 1.1 N N
60 CEP H142 C H sing 1.1 N N
61 CEP H143 C H sing 1.1 N N
62 CAP C9P C C sing 1.53 N N
63 CAP OAP C O sing 1.42 N N
64 CAP H10 C H sing 1.1 N N
65 OAP H3 O H sing 0.97 N N
66 C9P O9P C O doub 1.23 N N
67 C9P N8P C N sing 1.39 N N
68 N8P C7P N C sing 1.44 N N
69 N8P HN8 N H sing 1.02 N N
70 C7P C6P C C sing 1.52 N N
71 C7P H71 C H sing 1.1 N N
72 C7P H72 C H sing 1.1 N N
73 C6P C5P C C sing 1.52 N N
74 C6P H61 C H sing 1.1 N N
75 C6P H62 C H sing 1.1 N N
76 C5P N4P C N sing 1.39 N N
77 C5P O5P C O doub 1.23 N N
78 N4P C3P N C sing 1.44 N N
79 N4P HN4 N H sing 1.02 N N
80 C3P C2P C C sing 1.52 N N
81 C3P H31 C H sing 1.1 N N
82 C3P H32 C H sing 1.1 N N
83 C2P S1P C S sing 1.82 N N
84 C2P H21 C H sing 1.09 N N
85 C2P H22 C H sing 1.1 N N
86 S1P C1 S C sing 1.77 N N
87 O1 C1 O C doub 1.23 N N
88 C1 C3 C C sing 1.52 N N
89 C2 C3 C C sing 1.52 N N
90 C2 H11 C H sing 1.1 N N
91 C2 H12 C H sing 1.1 N N
92 C2 H13 C H sing 1.1 N N
93 C3 C4 C C sing 1.53 N N
94 C3 H4 C H sing 1.1 N N
95 C4 H41 C H sing 1.1 N N
96 C4 H42 C H sing 1.09 N N
97 C4 H43 C H sing 1.1 N N