Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : D1R    

Bonds between two atoms of the molecule

Total Number of Bonds: 84


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C39 C40 C C sing 1.53 N N
2 C39 N3 C N sing 1.47 N N
3 C39 H391 C H sing 1.1 N N
4 C39 H392 C H sing 1.09 N N
5 C40 N4 C N sing 1.47 N N
6 C40 H401 C H sing 1.1 N N
7 C40 H402 C H sing 1.1 N N
8 N4 C33 N C sing 1.46 N N
9 N4 C49 N C sing 1.47 N N
10 C33 H331 C H sing 1.09 N N
11 C33 H332 C H sing 1.09 N N
12 C33 H333 C H sing 1.09 N N
13 C49 C48 C C sing 1.53 N N
14 C49 H491 C H sing 1.1 N N
15 C49 H492 C H sing 1.1 N N
16 C48 N3 C N sing 1.46 N N
17 C48 H481 C H sing 1.09 N N
18 C48 H482 C H sing 1.1 N N
19 N3 C8 N C sing 1.41 N N
20 C8 N1 C N sing 1.39 N N
21 C8 O2 C O doub 1.24 N N
22 N1 C9 N C sing 1.45 N N
23 N1 HN1 N H sing 1.01 N N
24 C9 C17 C C sing 1.52 N N
25 C9 C10 C C sing 1.53 N N
26 C9 H9 C H sing 1.1 N N
27 C10 C11 C C sing 1.51 N N
28 C10 H101 C H sing 1.1 N N
29 C10 H102 C H sing 1.1 N N
30 C11 C12 C C sing 1.39 N Y
31 C11 C16 C C doub 1.39 N Y
32 C12 C13 C C doub 1.39 N Y
33 C12 H12 C H sing 1.09 N N
34 C13 C14 C C sing 1.39 N Y
35 C13 H13 C H sing 1.09 N N
36 C14 C15 C C doub 1.39 N Y
37 C14 H14 C H sing 1.09 N N
38 C15 C16 C C sing 1.39 N Y
39 C15 H15 C H sing 1.09 N N
40 C16 H16 C H sing 1.09 N N
41 C17 O3 C O doub 1.23 N N
42 C17 N2 C N sing 1.39 N N
43 N2 C18 N C sing 1.44 N N
44 N2 HN2 N H sing 1.02 N N
45 C18 C19 C C sing 1.54 N N
46 C18 C27 C C sing 1.54 N N
47 C18 H18 C H sing 1.1 N N
48 C19 C20 C C sing 1.53 N N
49 C19 H191 C H sing 1.1 N N
50 C19 H192 C H sing 1.1 N N
51 C20 C21 C C sing 1.51 N N
52 C20 H201 C H sing 1.1 N N
53 C20 H202 C H sing 1.1 N N
54 C21 C22 C C sing 1.39 N Y
55 C21 C26 C C doub 1.39 N Y
56 C22 C23 C C doub 1.39 N Y
57 C22 H22 C H sing 1.09 N N
58 C23 C24 C C sing 1.39 N Y
59 C23 H23 C H sing 1.09 N N
60 C24 C25 C C doub 1.4 N Y
61 C24 H24 C H sing 1.09 N N
62 C25 C26 C C sing 1.39 N Y
63 C25 H25 C H sing 1.09 N N
64 C26 H26 C H sing 1.09 N N
65 C27 C28 C C sing 1.52 N N
66 C27 H271 C H sing 1.1 N N
67 C27 H272 C H sing 1.1 N N
68 C28 S1 C S sing 1.76 N N
69 C28 H281 C H sing 1.09 N N
70 C28 H282 C H sing 1.09 N N
71 S1 O4 S O doub 1.45 N N
72 S1 O5 S O doub 1.45 N N
73 S1 CAB S C sing 1.77 N N
74 CAB CAA C C doub 1.38 N Y
75 CAB CAD C C sing 1.38 N Y
76 CAA CAC C C sing 1.39 N Y
77 CAA HAA C H sing 1.09 N N
78 CAC CAE C C doub 1.4 N Y
79 CAC HAC C H sing 1.09 N N
80 CAE CAF C C sing 1.39 N Y
81 CAE HAE C H sing 1.09 N N
82 CAF CAD C C doub 1.4 N Y
83 CAF HAF C H sing 1.09 N N
84 CAD HAD C H sing 1.09 N N