Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : D2E    

Bonds between two atoms of the molecule

Total Number of Bonds: 45


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C doub 1.33 N Y
2 N1 C6 N C sing 1.33 N Y
3 C2 N3 C N sing 1.32 N Y
4 C2 NAB C N sing 1.38 N N
5 N3 C4 N C doub 1.33 N Y
6 C4 C5 C C sing 1.4 N Y
7 C4 OAO C O sing 1.34 N Y
8 C5 C6 C C doub 1.4 N Y
9 C5 CAR C C sing 1.47 N Y
10 C6 NAC C N sing 1.38 N N
11 CAA OAN C O sing 1.43 N N
12 CAD CAP C C doub 1.34 N N
13 CAD CAR C C sing 1.47 N N
14 CAE CAF C C doub 1.38 N Y
15 CAE CAG C C sing 1.38 N Y
16 CAF CAH C C sing 1.38 N Y
17 CAG CAT C C doub 1.38 N Y
18 CAH CAU C C doub 1.4 N Y
19 CAI OAO C O sing 1.34 E Y
20 CAI CAR C C doub 1.36 N Y
21 CAJ CAK C C sing 1.53 N N
22 CAJ CAX C C sing 1.53 N N
23 CAK CAX C C sing 1.53 N N
24 OAN CAT O C sing 1.36 N N
25 CAP CAU C C sing 1.47 N N
26 CAP CAX C C sing 1.51 N N
27 CAT CAU C C sing 1.4 N Y
28 CAA HAA C H sing 1.09 N N
29 CAA HAAA C H sing 1.09 N N
30 CAA HAAB C H sing 1.09 N N
31 NAB HNAB N H sing 0.97 N N
32 NAB HNAA N H sing 0.97 N N
33 NAC HNAC N H sing 0.97 N N
34 NAC HNAD N H sing 0.97 N N
35 CAD HAD C H sing 1.08 N N
36 CAE HAE C H sing 1.08 N N
37 CAF HAF C H sing 1.08 N N
38 CAG HAG C H sing 1.08 N N
39 CAH HAH C H sing 1.08 N N
40 CAI HAI C H sing 1.08 N N
41 CAJ HAJ C H sing 1.09 N N
42 CAJ HAJA C H sing 1.09 N N
43 CAK HAK C H sing 1.09 N N
44 CAK HAKA C H sing 1.09 N N
45 CAX HAX C H sing 1.09 N N