Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : D6T    

Bonds between two atoms of the molecule

Total Number of Bonds: 115


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C38 C39 C C doub 1.36 N Y
2 C38 C37 C C sing 1.39 N Y
3 C39 C13 C C sing 1.4 N Y
4 C37 C36 C C doub 1.36 N Y
5 C46 O7 C O sing 1.43 N N
6 O7 C45 O C sing 1.43 N N
7 C13 C14 C C doub 1.41 N Y
8 C13 C12 C C sing 1.42 N Y
9 C36 C12 C C sing 1.41 N Y
10 C14 C15 C C sing 1.37 N Y
11 C45 C44 C C sing 1.53 N N
12 C12 N2 C N doub 1.33 N Y
13 C44 O6 C O sing 1.43 N N
14 C15 C11 C C doub 1.4 N Y
15 N2 C11 N C sing 1.32 N Y
16 C11 C10 C C sing 1.48 N N
17 O6 C43 O C sing 1.43 N N
18 C43 C42 C C sing 1.53 N N
19 C10 O2 C O doub 1.21 N N
20 C10 N1 C N sing 1.35 N N
21 N1 C3 N C sing 1.39 N N
22 C42 O5 C O sing 1.43 N N
23 O1 C7 O C doub 1.21 N N
24 O5 C41 O C sing 1.43 N N
25 C3 C4 C C doub 1.39 N Y
26 C3 C2 C C sing 1.41 N Y
27 C7 C2 C C sing 1.46 N N
28 C7 C8 C C sing 1.51 N N
29 C4 C5 C C sing 1.39 N Y
30 C41 C40 C C sing 1.53 N N
31 C2 C1 C C doub 1.4 N Y
32 C8 C9 C C sing 1.53 N N
33 C40 O4 C O sing 1.43 N N
34 O4 C32 O C sing 1.36 N N
35 C5 C16 C C sing 1.48 N N
36 C5 C6 C C doub 1.4 N Y
37 N5 C16 N C sing 1.34 N Y
38 N5 N4 N N doub 1.29 N Y
39 C1 C6 C C sing 1.36 N Y
40 C16 C17 C C doub 1.36 N Y
41 N4 N3 N N sing 1.4 N Y
42 C32 C31 C C doub 1.38 N Y
43 C32 C33 C C sing 1.39 N Y
44 C35 O3 C O sing 1.43 N N
45 O3 C33 O C sing 1.36 N N
46 C17 N3 C N sing 1.35 N Y
47 C31 C27 C C sing 1.39 N Y
48 N3 C18 N C sing 1.4 N N
49 C33 C34 C C doub 1.38 N Y
50 C23 C18 C C doub 1.39 N Y
51 C23 C22 C C sing 1.38 N Y
52 C18 C19 C C sing 1.39 N Y
53 C27 C26 C C sing 1.51 N N
54 C27 C28 C C doub 1.38 N Y
55 C34 C28 C C sing 1.39 N Y
56 C22 C21 C C doub 1.38 N Y
57 C26 N6 C N sing 1.47 N N
58 C28 C29 C C sing 1.51 N N
59 C19 C20 C C doub 1.38 N Y
60 C21 C20 C C sing 1.38 N Y
61 C21 C24 C C sing 1.51 N N
62 N6 C25 N C sing 1.47 N N
63 N6 C30 N C sing 1.47 N N
64 C25 C24 C C sing 1.53 N N
65 C29 C30 C C sing 1.53 N N
66 C1 H1 C H sing 1.08 N N
67 C4 H2 C H sing 1.08 N N
68 C14 H3 C H sing 1.08 N N
69 C15 H4 C H sing 1.08 N N
70 C17 H5 C H sing 1.08 N N
71 C19 H6 C H sing 1.08 N N
72 C20 H7 C H sing 1.08 N N
73 C22 H8 C H sing 1.08 N N
74 C23 H9 C H sing 1.08 N N
75 C24 H10 C H sing 1.09 N N
76 C24 H11 C H sing 1.09 N N
77 C25 H12 C H sing 1.09 N N
78 C25 H13 C H sing 1.09 N N
79 C26 H14 C H sing 1.09 N N
80 C29 H15 C H sing 1.09 N N
81 C30 H16 C H sing 1.09 N N
82 C31 H17 C H sing 1.08 N N
83 C34 H18 C H sing 1.08 N N
84 C35 H19 C H sing 1.09 N N
85 C35 H20 C H sing 1.09 N N
86 C35 H21 C H sing 1.09 N N
87 C36 H22 C H sing 1.08 N N
88 C37 H23 C H sing 1.08 N N
89 C38 H24 C H sing 1.08 N N
90 C39 H25 C H sing 1.08 N N
91 C40 H26 C H sing 1.09 N N
92 C40 H27 C H sing 1.09 N N
93 C41 H28 C H sing 1.09 N N
94 C41 H29 C H sing 1.09 N N
95 C42 H30 C H sing 1.09 N N
96 C42 H31 C H sing 1.09 N N
97 C43 H32 C H sing 1.09 N N
98 C43 H33 C H sing 1.09 N N
99 C44 H34 C H sing 1.09 N N
100 C44 H35 C H sing 1.09 N N
101 C45 H36 C H sing 1.09 N N
102 C45 H37 C H sing 1.09 N N
103 C46 H38 C H sing 1.09 N N
104 C46 H39 C H sing 1.09 N N
105 C46 H40 C H sing 1.09 N N
106 C6 H41 C H sing 1.08 N N
107 C8 H42 C H sing 1.09 N N
108 C8 H43 C H sing 1.09 N N
109 C9 H44 C H sing 1.09 N N
110 C9 H45 C H sing 1.09 N N
111 C9 H46 C H sing 1.09 N N
112 N1 H47 N H sing 0.97 N N
113 C26 H48 C H sing 1.09 N N
114 C29 H49 C H sing 1.09 N N
115 C30 H50 C H sing 1.09 N N