Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : DG1    

Bonds between two atoms of the molecule

Total Number of Bonds: 94


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CAT CAR C C sing 1.38 N Y
2 CAT CBN C C doub 1.4 N Y
3 CAT HAT C H sing 1.08 N N
4 CAR NAZ C N doub 1.32 N Y
5 CAR HAR C H sing 1.08 N N
6 NAZ CAS N C sing 1.32 N Y
7 CAS CAU C C doub 1.38 N Y
8 CAS HAS C H sing 1.08 N N
9 CAU CBN C C sing 1.4 N Y
10 CAU HAU C H sing 1.08 N N
11 CBN CBK C C sing 1.48 N N
12 CBK OAD C O doub 1.21 N N
13 CBK CBT C C sing 1.51 N N
14 CBT CBL C C sing 1.5 N N
15 CBT CAO C C sing 1.5 N N
16 CBT HBT C H sing 1.09 N N
17 CBL CBJ C C sing 1.42 N N
18 CBL CAQ C C doub 1.35 N N
19 CAQ NBZ C N sing 1.37 N N
20 CAQ HAQ C H sing 1.08 N N
21 CBJ OAC C O doub 1.22 N N
22 CBJ NAA C N sing 1.35 N N
23 NAA HAA1 N H sing 0.97 N N
24 NAA HAA2 N H sing 0.97 N N
25 CAO CAP C C doub 1.31 N N
26 CAO HAO C H sing 1.08 N N
27 CAP NBZ C N sing 1.39 N N
28 CAP HAP C H sing 1.08 N N
29 NBZ C1' N C sing 1.46 N N
30 C1' C2' C C sing 1.55 N N
31 C1' O4' C O sing 1.44 N N
32 C1' H1' C H sing 1.09 N N
33 O4' C4' O C sing 1.44 N N
34 C2' O2' C O sing 1.43 N N
35 C2' C3' C C sing 1.55 N N
36 C2' H2' C H sing 1.09 N N
37 O2' HO2' O H sing 0.97 N N
38 C3' C4' C C sing 1.54 N N
39 C3' O3' C O sing 1.43 N N
40 C3' H3' C H sing 1.09 N N
41 O3' HO3' O H sing 0.97 N N
42 C4' C5' C C sing 1.53 N N
43 C4' H4' C H sing 1.09 N N
44 C5' O5' C O sing 1.43 N N
45 C5' H5'1 C H sing 1.09 N N
46 C5' H5'2 C H sing 1.09 N N
47 O5' PCC O P sing 1.61 N N
48 PCC OAF P O doub 1.48 N N
49 PCC OAM P O sing 1.61 N N
50 PCC OBI P O sing 1.61 N N
51 OAM HOAM O H sing 0.97 N N
52 OBI PCD O P sing 1.61 N N
53 PCD OAG P O doub 1.48 N N
54 PCD OAN P O sing 1.61 N N
55 PCD OBE P O sing 1.61 N N
56 OAN HOAN O H sing 0.97 N N
57 OBE CAY O C sing 1.43 N N
58 CAY CBV C C sing 1.53 N N
59 CAY HAY1 C H sing 1.09 N N
60 CAY HAY2 C H sing 1.09 N N
61 CBV CBS C C sing 1.54 N N
62 CBV OBG C O sing 1.44 N N
63 CBV HBV C H sing 1.09 N N
64 OBG CBY O C sing 1.44 N N
65 CBS OAJ C O sing 1.43 N N
66 CBS CBW C C sing 1.54 N N
67 CBS HBS C H sing 1.09 N N
68 OAJ HOAJ O H sing 0.97 N N
69 CBW OBH C O sing 1.43 N N
70 CBW CBY C C sing 1.54 N N
71 CBW HBW C H sing 1.09 N N
72 OBH PCB O P sing 1.61 N N
73 PCB OAE P O doub 1.48 N N
74 PCB OAL P O sing 1.61 N N
75 PCB OAK P O sing 1.61 N N
76 OAK HOAK O H sing 0.97 N N
77 OAL HOAL O H sing 0.97 N N
78 CBY N9 C N sing 1.47 N N
79 CBY HBY C H sing 1.09 N N
80 N9 C8 N C sing 1.36 N Y
81 N9 C4 N C sing 1.37 N Y
82 C8 N7 C N doub 1.3 N Y
83 C8 H8 C H sing 1.08 N N
84 N7 C5 N C sing 1.35 N Y
85 C5 C4 C C doub 1.4 N Y
86 C5 C6 C C sing 1.41 N Y
87 C4 N3 C N sing 1.33 N Y
88 N3 C2 N C doub 1.32 N Y
89 C2 N1 C N sing 1.32 N Y
90 C2 H2 C H sing 1.08 N N
91 N1 C6 N C doub 1.33 N Y
92 C6 N6 C N sing 1.38 N N
93 N6 HN61 N H sing 0.97 N N
94 N6 HN62 N H sing 0.97 N N