Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : DGG    

Bonds between two atoms of the molecule

Total Number of Bonds: 125


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C16 C15 C C sing 1.52 N N
2 C16 H161 C H sing 1.09 N N
3 C16 H162 C H sing 1.1 N N
4 C16 H163 C H sing 1.09 N N
5 C15 C14 C C sing 1.53 N N
6 C15 H151 C H sing 1.1 N N
7 C15 H152 C H sing 1.1 N N
8 C14 C13 C C sing 1.53 N N
9 C14 H141 C H sing 1.1 N N
10 C14 H142 C H sing 1.1 N N
11 C13 C12 C C sing 1.53 N N
12 C13 H131 C H sing 1.1 N N
13 C13 H132 C H sing 1.1 N N
14 C12 C11 C C sing 1.53 N N
15 C12 H121 C H sing 1.1 N N
16 C12 H122 C H sing 1.1 N N
17 C11 C10 C C sing 1.53 N N
18 C11 H111 C H sing 1.1 N N
19 C11 H112 C H sing 1.1 N N
20 C10 C9 C C sing 1.53 N N
21 C10 H101 C H sing 1.1 N N
22 C10 H102 C H sing 1.1 N N
23 C9 C8 C C sing 1.53 N N
24 C9 HC91 C H sing 1.1 N N
25 C9 HC92 C H sing 1.1 N N
26 C8 C7 C C sing 1.53 N N
27 C8 HC81 C H sing 1.1 N N
28 C8 HC82 C H sing 1.1 N N
29 C7 C6 C C sing 1.53 N N
30 C7 HC71 C H sing 1.1 N N
31 C7 HC72 C H sing 1.1 N N
32 C6 C5 C C sing 1.53 N N
33 C6 HC61 C H sing 1.1 N N
34 C6 HC62 C H sing 1.1 N N
35 C5 C4 C C sing 1.53 N N
36 C5 HC51 C H sing 1.09 N N
37 C5 HC52 C H sing 1.1 N N
38 C4 C3 C C sing 1.53 N N
39 C4 HC41 C H sing 1.1 N N
40 C4 HC42 C H sing 1.1 N N
41 C3 C2 C C sing 1.53 N N
42 C3 HC31 C H sing 1.1 N N
43 C3 HC32 C H sing 1.1 N N
44 C2 C1 C C sing 1.51 N N
45 C2 HC21 C H sing 1.1 N N
46 C2 HC22 C H sing 1.1 N N
47 C1 O1 C O doub 1.22 N N
48 C1 O17 C O sing 1.36 N N
49 O17 C17 O C sing 1.43 N N
50 C17 C19 C C sing 1.52 N N
51 C17 H171 C H sing 1.09 N N
52 C17 H172 C H sing 1.09 N N
53 C19 O19 C O sing 1.43 N N
54 C19 C18 C C sing 1.52 N N
55 C19 H191 C H sing 1.1 N N
56 O19 C21 O C sing 1.36 N N
57 C21 O21 C O doub 1.22 N N
58 C21 C22 C C sing 1.51 N N
59 C22 C23 C C sing 1.53 N N
60 C22 H221 C H sing 1.1 N N
61 C22 H222 C H sing 1.1 N N
62 C23 C24 C C sing 1.53 N N
63 C23 H231 C H sing 1.1 N N
64 C23 H232 C H sing 1.1 N N
65 C24 C25 C C sing 1.53 N N
66 C24 H241 C H sing 1.1 N N
67 C24 H242 C H sing 1.09 N N
68 C25 C26 C C sing 1.53 N N
69 C25 H251 C H sing 1.1 N N
70 C25 H252 C H sing 1.1 N N
71 C26 C27 C C sing 1.53 N N
72 C26 H261 C H sing 1.1 N N
73 C26 H262 C H sing 1.1 N N
74 C27 C28 C C sing 1.53 N N
75 C27 H271 C H sing 1.1 N N
76 C27 H272 C H sing 1.1 N N
77 C28 C29 C C sing 1.52 N N
78 C28 H281 C H sing 1.1 N N
79 C28 H282 C H sing 1.1 N N
80 C29 C30 C C sing 1.48 N N
81 C29 C39 C C sing 1.48 N N
82 C29 H291 C H sing 1.07 N N
83 C30 C39 C C sing 1.5 N N
84 C30 C31 C C sing 1.48 N N
85 C30 H301 C H sing 1.08 N N
86 C39 H391 C H sing 1.08 N N
87 C39 H392 C H sing 1.08 N N
88 C31 C32 C C sing 1.54 N N
89 C31 H311 C H sing 1.11 N N
90 C31 H312 C H sing 1.11 N N
91 C32 C33 C C sing 1.53 N N
92 C32 H321 C H sing 1.1 N N
93 C32 H322 C H sing 1.1 N N
94 C33 C34 C C sing 1.53 N N
95 C33 H331 C H sing 1.1 N N
96 C33 H332 C H sing 1.1 N N
97 C34 C35 C C sing 1.53 N N
98 C34 H341 C H sing 1.1 N N
99 C34 H342 C H sing 1.1 N N
100 C35 C36 C C sing 1.52 N N
101 C35 H351 C H sing 1.1 N N
102 C35 H352 C H sing 1.1 N N
103 C36 H361 C H sing 1.09 N N
104 C36 H362 C H sing 1.09 N N
105 C36 H363 C H sing 1.09 N N
106 C18 OP2 C O sing 1.42 N N
107 C18 H181 C H sing 1.09 N N
108 C18 H182 C H sing 1.09 N N
109 P OP1 P O sing 1.62 N N
110 P OP2 P O sing 1.62 N N
111 P OP3 P O doub 1.5 N N
112 P OP4 P O sing 1.62 N N
113 OP1 HOP1 O H sing 0.98 N N
114 OP4 C40 O C sing 1.42 N N
115 C40 C41 C C sing 1.52 N N
116 C40 H401 C H sing 1.1 N N
117 C40 H402 C H sing 1.09 N N
118 C41 O42 C O sing 1.43 N N
119 C41 C43 C C sing 1.52 N N
120 C41 H411 C H sing 1.1 N N
121 O42 H421 O H sing 0.97 N N
122 C43 O44 C O sing 1.42 N N
123 C43 H431 C H sing 1.1 N N
124 C43 H432 C H sing 1.09 N N
125 O44 H441 O H sing 0.97 N N