Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : DKT    

Bonds between two atoms of the molecule

Total Number of Bonds: 114


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N CC1 N C sing 1.35 N N
2 N CA1 N C sing 1.46 N N
3 N HN N H sing 0.97 N N
4 CC1 OC2 C O sing 1.35 N N
5 CC1 O12 C O doub 1.21 N N
6 OC2 CC2 O C sing 1.45 N N
7 CC2 CC3 C C sing 1.51 N N
8 CC2 HC21 C H sing 1.09 N N
9 CC2 HC22 C H sing 1.09 N N
10 CC3 C2 C C doub 1.38 N Y
11 CC3 C5 C C sing 1.38 N Y
12 C2 C3 C C sing 1.38 N Y
13 C2 H2 C H sing 1.08 N N
14 C3 C1 C C doub 1.38 N Y
15 C3 H3 C H sing 1.08 N N
16 C1 C4 C C sing 1.38 N Y
17 C1 H1 C H sing 1.08 N N
18 C4 C5 C C doub 1.38 N Y
19 C4 H4 C H sing 1.08 N N
20 C5 H5 C H sing 1.08 N N
21 CA1 CB1 C C sing 1.53 N N
22 CA1 C7 C C sing 1.51 N N
23 CA1 HA1 C H sing 1.09 N N
24 CB1 CG1 C C sing 1.53 N N
25 CB1 HB11 C H sing 1.09 N N
26 CB1 HB12 C H sing 1.09 N N
27 CG1 CD1 C C sing 1.53 N N
28 CG1 CD2 C C sing 1.53 N N
29 CG1 HG1 C H sing 1.09 N N
30 CD1 CE1 C C sing 1.53 N N
31 CD1 HD11 C H sing 1.09 N N
32 CD1 HD12 C H sing 1.09 N N
33 CD2 CE2 C C sing 1.53 N N
34 CD2 HD21 C H sing 1.09 N N
35 CD2 HD22 C H sing 1.09 N N
36 CE1 CZ1 C C sing 1.53 N N
37 CE1 HE11 C H sing 1.09 N N
38 CE1 HE12 C H sing 1.09 N N
39 CE2 CZ1 C C sing 1.53 N N
40 CE2 HE21 C H sing 1.09 N N
41 CE2 HE22 C H sing 1.09 N N
42 CZ1 HZ11 C H sing 1.09 N N
43 CZ1 HZ12 C H sing 1.09 N N
44 C6 O C O doub 1.21 N N
45 C6 C7 C C sing 1.49 N N
46 C6 N1 C N sing 1.35 N N
47 C7 O1 C O doub 1.21 N N
48 N1 CA2 N C sing 1.46 N N
49 N1 HN1 N H sing 0.97 N N
50 CA2 CB2 C C sing 1.53 N N
51 CA2 C8 C C sing 1.51 N N
52 CA2 HA2 C H sing 1.09 N N
53 CB2 CG2 C C sing 1.53 N N
54 CB2 HB21 C H sing 1.09 N N
55 CB2 HB22 C H sing 1.09 N N
56 CG2 CD3 C C sing 1.53 N N
57 CG2 HG21 C H sing 1.09 N N
58 CG2 HG22 C H sing 1.09 N N
59 CD3 NE3 C N sing 1.46 N N
60 CD3 HD31 C H sing 1.09 N N
61 CD3 HD32 C H sing 1.09 N N
62 NE3 CZ2 N C sing 1.38 N N
63 NE3 HNE N H sing 0.97 N N
64 CZ2 NH1 C N sing 1.37 N N
65 CZ2 NH2 C N doub 1.3 N N
66 NH1 HH11 N H sing 0.97 N N
67 NH1 HH12 N H sing 0.97 N N
68 NH2 HH21 N H sing 0.97 N N
69 C8 O2 C O doub 1.21 N N
70 C8 N2 C N sing 1.35 N N
71 N2 CA3 N C sing 1.46 N N
72 N2 HN2 N H sing 0.97 N N
73 CA3 C9 C C sing 1.51 N N
74 CA3 CB3 C C sing 1.53 N N
75 CA3 HA3 C H sing 1.09 N N
76 C9 O3 C O doub 1.21 N N
77 C9 N3 C N sing 1.35 N N
78 CB3 CG3 C C sing 1.53 N N
79 CB3 HB31 C H sing 1.09 N N
80 CB3 HB32 C H sing 1.09 N N
81 CG3 CD4 C C sing 1.51 N N
82 CG3 HG31 C H sing 1.09 N N
83 CG3 HG32 C H sing 1.09 N N
84 CD4 OE4 C O sing 1.34 N N
85 CD4 OE5 C O doub 1.21 N N
86 OE4 HOE O H sing 0.97 N N
87 N3 CA4 N C sing 1.46 N N
88 N3 HN3 N H sing 0.97 N N
89 CA4 CB4 C C sing 1.53 N N
90 CA4 C10 C C sing 1.51 N N
91 CA4 HA4 C H sing 1.09 N N
92 CB4 CG4 C C sing 1.53 N N
93 CB4 HB41 C H sing 1.09 N N
94 CB4 HB42 C H sing 1.09 N N
95 CG4 CD5 C C sing 1.53 N N
96 CG4 CD6 C C sing 1.53 N N
97 CG4 HG4 C H sing 1.09 N N
98 CD5 CE6 C C sing 1.53 N N
99 CD5 HD51 C H sing 1.09 N N
100 CD5 HD52 C H sing 1.09 N N
101 CD6 CE7 C C sing 1.53 N N
102 CD6 HD61 C H sing 1.09 N N
103 CD6 HD62 C H sing 1.09 N N
104 CE6 CZ3 C C sing 1.53 N N
105 CE6 HE61 C H sing 1.09 N N
106 CE6 HE62 C H sing 1.09 N N
107 CE7 CZ3 C C sing 1.53 N N
108 CE7 HE71 C H sing 1.09 N N
109 CE7 HE72 C H sing 1.09 N N
110 CZ3 HZ31 C H sing 1.09 N N
111 CZ3 HZ32 C H sing 1.09 N N
112 C10 OT C O doub 1.21 N N
113 C10 OXT C O sing 1.34 N N
114 OXT HXT O H sing 0.97 N N