Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : DNB    

Bonds between two atoms of the molecule

Total Number of Bonds: 35


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2' C2' O C sing 1.43 N N
2 O2' HO2' O H sing 0.97 N N
3 C2' C3' C C sing 1.55 N N
4 C2' C1' C C sing 1.55 N N
5 C2' H2' C H sing 1.09 N N
6 C3' O3' C O sing 1.43 N N
7 C3' C4' C C sing 1.54 N N
8 C3' H3' C H sing 1.09 N N
9 O3' HO3' O H sing 0.97 N N
10 C1' N4' C N sing 1.49 N N
11 C1' C1 C C sing 1.51 N N
12 C1' H1' C H sing 1.09 N N
13 N4' C4' N C sing 1.48 N N
14 N4' HN4' N H sing 1.01 N N
15 C4' C5' C C sing 1.53 N N
16 C4' H4' C H sing 1.09 N N
17 C5' O5' C O sing 1.43 N N
18 C5' H5' C H sing 1.09 N N
19 C5' H5'A C H sing 1.09 N N
20 O5' HO5' O H sing 0.97 N N
21 C1 C6 C C doub 1.38 N Y
22 C1 C2 C C sing 1.38 N Y
23 C6 C5 C C sing 1.38 N Y
24 C6 H6 C H sing 1.08 N N
25 C5 C4 C C doub 1.39 N Y
26 C5 H5 C H sing 1.08 N N
27 C4 C3 C C sing 1.4 N Y
28 C3 N3 C N sing 1.4 N N
29 C3 C2 C C doub 1.39 N Y
30 N3 HN3 N H sing 0.97 N N
31 N3 HN3A N H sing 0.97 N N
32 C2 H2 C H sing 1.08 N N
33 C4 N4 C N sing 1.4 N N
34 N4 HN4 N H sing 0.97 N N
35 N4 HN4A N H sing 0.97 N N