Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : DQB    

Bonds between two atoms of the molecule

Total Number of Bonds: 52


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C11 C12 C C doub 1.39 N Y
2 C11 C16 C C sing 1.39 N Y
3 C11 N10 C N sing 1.39 N N
4 C12 C13 C C sing 1.38 N Y
5 C12 H12 C H sing 1.08 N N
6 C13 C14 C C doub 1.4 N Y
7 C13 H13 C H sing 1.08 N N
8 C14 C15 C C sing 1.4 N Y
9 C14 C C C sing 1.48 N N
10 C15 C16 C C doub 1.38 N Y
11 C15 H15 C H sing 1.08 N N
12 C16 H16 C H sing 1.08 N N
13 C O C O doub 1.22 N N
14 C N C N sing 1.35 N N
15 N CA N C sing 1.46 N N
16 N HN N H sing 0.97 N N
17 CA CB C C sing 1.53 N N
18 CA HA1 C H sing 1.09 N N
19 CA HA2 C H sing 1.09 N N
20 CB CG C C sing 1.53 N N
21 CB HB1 C H sing 1.09 N N
22 CB HB2 C H sing 1.09 N N
23 CG CD C C sing 1.51 N N
24 CG HG1 C H sing 1.09 N N
25 CG HG2 C H sing 1.09 N N
26 CD OE1 C O doub 1.21 N N
27 CD OE2 C O sing 1.34 N N
28 OE2 HE2 O H sing 0.97 N N
29 N10 C9 N C sing 1.46 N N
30 N10 H10 N H sing 0.97 N N
31 N1 C2 N C doub 1.31 N Y
32 N1 C8A N C sing 1.35 N Y
33 C2 N3 C N sing 1.36 N Y
34 C2 NA2 C N sing 1.37 N N
35 N3 C4 N C sing 1.35 N Y
36 N3 HN3 N H sing 0.97 N N
37 C4 C4A C C sing 1.47 N Y
38 C4 OA4 C O doub 1.22 N N
39 C5 C6 C C doub 1.37 N Y
40 C5 C4A C C sing 1.39 N Y
41 C5 H5 C H sing 1.08 N N
42 C6 C7 C C sing 1.39 N Y
43 C6 C9 C C sing 1.51 N N
44 C7 C8 C C doub 1.37 N Y
45 C7 H7 C H sing 1.08 N N
46 C8 C8A C C sing 1.4 N Y
47 C8 H8 C H sing 1.08 N N
48 C4A C8A C C doub 1.41 N Y
49 NA2 HA21 N H sing 0.97 N N
50 NA2 HA22 N H sing 0.97 N N
51 C9 H91 C H sing 1.09 N N
52 C9 H92 C H sing 1.09 N N