Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : DVD    

Bonds between two atoms of the molecule

Total Number of Bonds: 68


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 N2 C N sing 1.47 N N
2 N2 C39 N C sing 1.47 N N
3 N2 C3 N C sing 1.47 N N
4 C39 C6 C C sing 1.51 N N
5 C3 C4 C C sing 1.53 N N
6 C6 N5 C N sing 1.36 N Y
7 C6 C7 C C doub 1.34 N Y
8 C4 N5 C N sing 1.47 N N
9 N5 N9 N N sing 1.39 N Y
10 C7 C8 C C sing 1.41 N Y
11 N9 C8 N C doub 1.32 N Y
12 C8 N10 C N sing 1.4 N N
13 N10 C11 N C sing 1.39 N N
14 C11 C12 C C doub 1.37 N N
15 C11 C17 C C sing 1.42 N N
16 C12 C13 C C sing 1.41 N N
17 O18 C17 O C doub 1.22 N N
18 C17 N15 C N sing 1.35 N N
19 C20 C21 C C doub 1.38 N Y
20 C20 C19 C C sing 1.39 N Y
21 C13 C19 C C sing 1.48 N N
22 C13 N14 C N doub 1.31 N N
23 C21 C22 C C sing 1.38 N Y
24 N15 N14 N N sing 1.4 N N
25 C19 C24 C C doub 1.39 N Y
26 C22 C23 C C doub 1.39 N Y
27 C24 C23 C C sing 1.39 N Y
28 C24 C25 C C sing 1.51 N N
29 C23 N27 C N sing 1.4 N N
30 C25 O26 C O sing 1.43 N N
31 N27 C28 N C sing 1.35 N N
32 O29 C28 O C doub 1.22 N N
33 C28 C30 C C sing 1.47 N N
34 C30 C31 C C doub 1.34 N Y
35 C30 S38 C S sing 1.76 N Y
36 C31 C32 C C sing 1.4 N Y
37 S38 C37 S C sing 1.76 N Y
38 C32 C37 C C doub 1.4 N Y
39 C32 C33 C C sing 1.42 N Y
40 C37 C36 C C sing 1.4 N Y
41 C33 C34 C C doub 1.36 N Y
42 C36 C35 C C doub 1.37 N Y
43 C34 C35 C C sing 1.39 N Y
44 C4 H1 C H sing 1.09 N N
45 C4 H2 C H sing 1.09 N N
46 C7 H3 C H sing 1.08 N N
47 C12 H4 C H sing 1.08 N N
48 C3 H6 C H sing 1.09 N N
49 C3 H7 C H sing 1.09 N N
50 C1 H8 C H sing 1.09 N N
51 C1 H9 C H sing 1.09 N N
52 C1 H10 C H sing 1.09 N N
53 C20 H11 C H sing 1.08 N N
54 C21 H12 C H sing 1.08 N N
55 C22 H13 C H sing 1.08 N N
56 C25 H14 C H sing 1.09 N N
57 C25 H15 C H sing 1.09 N N
58 C31 H17 C H sing 1.08 N N
59 C33 H18 C H sing 1.08 N N
60 C34 H19 C H sing 1.08 N N
61 C35 H20 C H sing 1.08 N N
62 C36 H21 C H sing 1.08 N N
63 C39 H22 C H sing 1.09 N N
64 C39 H23 C H sing 1.09 N N
65 N10 H24 N H sing 0.97 N N
66 N15 H16 N H sing 0.97 N N
67 N27 H25 N H sing 0.97 N N
68 O26 H26 O H sing 0.97 N N