Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : DX    

Bonds between two atoms of the molecule

Total Number of Bonds: 38


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2 C2 O C doub 1.22 N N
2 N1 C2 N C sing 1.35 N N
3 N1 C6 N C sing 1.35 N N
4 O6 C6 O C doub 1.22 N N
5 C2 N3 C N sing 1.34 N N
6 C6 N5 C N sing 1.35 N N
7 N3 C4 N C doub 1.33 N N
8 N5 C4 N C sing 1.37 N N
9 N5 C7 N C sing 1.39 N N
10 C4 N9 C N sing 1.36 N N
11 C7 C8 C C doub 1.33 N N
12 N9 C8 N C sing 1.38 N N
13 N9 C1' N C sing 1.46 N N
14 C2' C1' C C sing 1.55 N N
15 C2' C3' C C sing 1.54 N N
16 C1' O4' C O sing 1.45 N N
17 O5' P O P sing 1.61 N N
18 O5' C5' O C sing 1.43 N N
19 P OP1 P O doub 1.48 N N
20 P OP2 P O sing 1.61 N N
21 C3' O3' C O sing 1.43 N N
22 C3' C4' C C sing 1.54 N N
23 O4' C4' O C sing 1.44 N N
24 C4' C5' C C sing 1.53 N N
25 C5' H2 C H sing 1.09 N N
26 C5' H3 C H sing 1.09 N N
27 C4' H4 C H sing 1.09 N N
28 C3' H5 C H sing 1.09 N N
29 O3' H6 O H sing 0.97 N N
30 C2' H7 C H sing 1.09 N N
31 C2' H8 C H sing 1.09 N N
32 C1' H9 C H sing 1.09 N N
33 C7 H10 C H sing 1.08 N N
34 C8 H11 C H sing 1.08 N N
35 N1 H13 N H sing 0.97 N N
36 OP2 H14 O H sing 0.97 N N
37 P OP3 P O sing 1.61 N N
38 OP3 H1 O H sing 0.97 N N