Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : DYG    

Bonds between two atoms of the molecule

Total Number of Bonds: 40


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 CA1 N C sing 1.47 N N
2 N1 H N H sing 1.01 N N
3 N1 H2 N H sing 1.01 N N
4 OD2 HD2 O H sing 0.97 N N
5 OD2 CG1 O C sing 1.34 N N
6 OD1 CG1 O C doub 1.21 N N
7 CG1 CB1 C C sing 1.51 N N
8 CB1 HB11 C H sing 1.09 N N
9 CB1 HB12 C H sing 1.09 N N
10 CB1 CA1 C C sing 1.53 N N
11 CA1 HA1 C H sing 1.09 N N
12 CA1 C1 C C sing 1.51 N N
13 C1 N2 C N doub 1.3 N N
14 C1 N3 C N sing 1.37 N N
15 N2 CA2 N C sing 1.37 N N
16 N3 C2 N C sing 1.35 N N
17 N3 CA3 N C sing 1.46 N N
18 C2 CA2 C C sing 1.47 N N
19 C2 O2 C O doub 1.22 N N
20 CA2 CB2 C C doub 1.38 Z N
21 CA3 HA31 C H sing 1.09 N N
22 CA3 HA32 C H sing 1.09 N N
23 CA3 C3 C C sing 1.51 N N
24 CB2 HB2 C H sing 1.08 N N
25 CB2 CG2 C C sing 1.46 N N
26 CG2 CD2 C C doub 1.4 N Y
27 CG2 CD1 C C sing 1.4 N Y
28 CD1 CE1 C C doub 1.37 N Y
29 CD1 HD1 C H sing 1.08 N N
30 CD2 H1 C H sing 1.08 N N
31 CD2 CE2 C C sing 1.37 N Y
32 CE1 CZ C C sing 1.39 N Y
33 CE1 HE1 C H sing 1.08 N N
34 CE2 HE2 C H sing 1.08 N N
35 CE2 CZ C C doub 1.39 N Y
36 CZ OH C O sing 1.36 N N
37 OH HOH O H sing 0.97 N N
38 C3 O3 C O doub 1.21 N N
39 C3 OXT C O sing 1.34 N N
40 OXT HXT O H sing 0.97 N N