Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : EMK    

Bonds between two atoms of the molecule

Total Number of Bonds: 166


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C sing 1.5 N N
2 F1 C84 F C sing 1.4 N N
3 S1 C92 S C sing 1.81 N N
4 C2 C16 C C sing 1.53 N N
5 C3 C2 C C sing 1.53 N N
6 C3 C4 C C sing 1.53 N N
7 C3 O71 C O sing 1.44 N N
8 C4 C17 C C sing 1.54 N N
9 C5 C4 C C sing 1.52 N N
10 C5 O42 C O sing 1.44 N N
11 C6 C5 C C sing 1.53 N N
12 C6 C7 C C sing 1.52 N N
13 C8 C7 C C sing 1.53 N N
14 C8 C19 C C sing 1.52 N N
15 C9 C8 C C sing 1.54 N N
16 N9 C9 N C sing 1.49 N N
17 N9 C12 N C sing 1.49 N N
18 C10 O71 C O sing 1.43 N N
19 C10 C21 C C sing 1.53 N N
20 C12 C13 C C sing 1.51 N N
21 C13 C14 C C sing 1.51 N N
22 C14 C15 C C sing 1.53 N N
23 C14 C23 C C sing 1.54 N N
24 C15 O75 C O sing 1.44 N N
25 C18 C6 C C sing 1.53 N N
26 C20 C12 C C sing 1.51 N N
27 C21 C26 C C sing 1.53 N N
28 C24 C15 C C sing 1.53 N N
29 C25 C24 C C sing 1.53 N N
30 C26 O76 C O sing 1.44 N N
31 C26 C34 C C sing 1.53 N N
32 C28 C26 C C sing 1.52 N N
33 C28 O77 C O sing 1.44 N N
34 C30 C28 C C sing 1.52 N N
35 C32 C30 C C sing 1.53 N N
36 C38 N9 C N sing 1.52 N N
37 C39 C40 C C sing 1.53 N N
38 C40 O44 C O sing 1.43 N N
39 C40 C43 C C sing 1.53 N N
40 O41 C39 O C sing 1.43 N N
41 O41 C47 O C sing 1.43 N N
42 O42 C39 O C sing 1.43 N N
43 C43 N46 C N sing 1.47 N N
44 C45 C43 C C sing 1.53 N N
45 N46 C50 N C sing 1.47 N N
46 N46 C81 N C sing 1.47 N N
47 C47 C45 C C sing 1.53 N N
48 C48 C47 C C sing 1.53 N N
49 O70 C1 O C doub 1.22 N N
50 O72 C6 O C sing 1.44 N N
51 O73 C13 O C sing 1.43 N N
52 O74 C14 O C sing 1.43 N N
53 O75 C1 O C sing 1.32 N N
54 O76 C35 O C sing 1.43 N N
55 O78 C10 O C sing 1.42 N N
56 O78 C30 O C sing 1.42 N N
57 N81 C93 N C sing 1.35 N Y
58 N81 C83 N C sing 1.46 N N
59 C82 C81 C C sing 1.53 N N
60 C82 C94 C C sing 1.53 N N
61 N82 N81 N N sing 1.29 N Y
62 C83 C85 C C sing 1.53 N N
63 N83 N82 N N doub 1.29 N Y
64 N83 C95 N C sing 1.34 N Y
65 C84 C83 C C sing 1.53 N N
66 C85 C86 C C sing 1.51 N N
67 C85 O96 C O sing 1.43 N N
68 C86 C87 C C sing 1.38 N Y
69 C87 C88 C C doub 1.38 N Y
70 C89 S1 C S sing 1.76 N N
71 C89 C88 C C sing 1.38 N Y
72 C90 C89 C C doub 1.38 N Y
73 C91 C86 C C doub 1.38 N Y
74 C91 C90 C C sing 1.38 N Y
75 C94 C95 C C sing 1.51 N N
76 O94 S1 O S doub 1.42 N N
77 C95 C93 C C doub 1.35 N Y
78 O95 S1 O S doub 1.42 N N
79 C2 H2 C H sing 1.09 N N
80 C3 H3 C H sing 1.08 N N
81 C4 H4 C H sing 1.08 N N
82 C5 H5 C H sing 1.1 N N
83 C7 H7 C H sing 1.09 N N
84 C7 H7A C H sing 1.1 N N
85 C8 H8 C H sing 1.1 N N
86 C9 H9 C H sing 1.08 N N
87 C9 H9A C H sing 1.08 N N
88 C10 H10 C H sing 1.09 N N
89 C12 H12 C H sing 1.13 N N
90 C13 H13 C H sing 1.12 N N
91 C15 H15 C H sing 1.1 N N
92 C16 H16 C H sing 1.09 N N
93 C16 H16A C H sing 1.09 N N
94 C16 H16B C H sing 1.09 N N
95 C17 H17 C H sing 1.09 N N
96 C17 H17A C H sing 1.09 N N
97 C17 H17B C H sing 1.09 N N
98 C18 H18 C H sing 1.09 N N
99 C18 H18A C H sing 1.09 N N
100 C18 H18B C H sing 1.09 N N
101 C19 H19 C H sing 1.09 N N
102 C19 H19A C H sing 1.09 N N
103 C19 H19B C H sing 1.09 N N
104 C20 H20 C H sing 1.09 N N
105 C20 H20A C H sing 1.09 N N
106 C20 H20B C H sing 1.09 N N
107 C21 H21 C H sing 1.09 N N
108 C21 H21A C H sing 1.09 N N
109 C23 H23 C H sing 1.09 N N
110 C23 H23A C H sing 1.09 N N
111 C23 H23B C H sing 1.09 N N
112 C24 H24 C H sing 1.09 N N
113 C24 H351 C H sing 1.09 N N
114 C25 H25 C H sing 1.09 N N
115 C25 H25A C H sing 1.09 N N
116 C25 H381 C H sing 1.09 N N
117 C28 H28 C H sing 1.1 N N
118 C30 H30 C H sing 1.11 N N
119 C32 H32 C H sing 1.09 N N
120 C32 H32A C H sing 1.09 N N
121 C32 H32B C H sing 1.09 N N
122 C34 H34 C H sing 1.09 N N
123 C34 H34A C H sing 1.09 N N
124 C34 H34B C H sing 1.09 N N
125 C35 H35 C H sing 1.09 N N
126 C35 H35A C H sing 1.09 N N
127 C35 H35B C H sing 1.09 N N
128 C38 H38 C H sing 1.09 N N
129 C38 H38A C H sing 1.09 N N
130 C38 H38B C H sing 1.09 N N
131 C39 H39 C H sing 1.09 N N
132 C40 H40 C H sing 1.09 N N
133 C43 H43 C H sing 1.09 N N
134 O44 HO44 O H sing 0.97 N N
135 C45 H45 C H sing 1.09 N N
136 C45 H45A C H sing 1.09 N N
137 C47 H47 C H sing 1.09 N N
138 C48 H48 C H sing 1.09 N N
139 C48 H48A C H sing 1.09 N N
140 C48 H48B C H sing 1.09 N N
141 C50 H50 C H sing 1.09 N N
142 C50 H50A C H sing 1.09 N N
143 C50 H50B C H sing 1.09 N N
144 O72 HO72 O H sing 0.97 N N
145 O73 HO73 O H sing 0.97 N N
146 O74 HO74 O H sing 0.97 N N
147 O77 HO77 O H sing 0.97 N N
148 C81 H81 C H sing 1.09 N N
149 C81 H81A C H sing 1.09 N N
150 C82 H82 C H sing 1.09 N N
151 C82 H82A C H sing 1.09 N N
152 C83 H83 C H sing 1.09 N N
153 C84 H84 C H sing 1.09 N N
154 C84 H84A C H sing 1.09 N N
155 C85 H85 C H sing 1.09 N N
156 C87 H87 C H sing 1.08 N N
157 C88 H88 C H sing 1.08 N N
158 C90 H90 C H sing 1.08 N N
159 C91 H91 C H sing 1.08 N N
160 C92 H92 C H sing 1.09 N N
161 C92 H92A C H sing 1.09 N N
162 C92 H92B C H sing 1.09 N N
163 C93 H93 C H sing 1.08 N N
164 C94 H94 C H sing 1.09 N N
165 C94 H94A C H sing 1.09 N N
166 O96 HO96 O H sing 0.97 N N