Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : EOW    

Bonds between two atoms of the molecule

Total Number of Bonds: 32


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2P P O P doub 1.48 N N
2 C6 N1 C N doub 1.32 N Y
3 C6 C5 C C sing 1.38 N Y
4 N1 C2 N C sing 1.32 N Y
5 P O3P P O sing 1.61 N N
6 P O4P P O sing 1.61 N N
7 P O1P P O sing 1.61 N N
8 C5A O4P C O sing 1.43 N N
9 C5A C5 C C sing 1.51 N N
10 C5 C4 C C doub 1.38 N Y
11 C2 C2A C C sing 1.51 N N
12 C2 C3 C C doub 1.39 N Y
13 C2A C1 C C sing 1.53 N N
14 C1 C7 C C sing 1.47 N N
15 C4 C3 C C sing 1.39 N Y
16 C4 C4A C C sing 1.51 N N
17 C3 O3 C O sing 1.36 N N
18 C7 C8 C C trip 1.17 N N
19 O3P H1 O H sing 0.97 N N
20 O1P H2 O H sing 0.97 N N
21 C5A H3 C H sing 1.09 N N
22 C5A H4 C H sing 1.09 N N
23 C6 H5 C H sing 1.08 N N
24 C4A H6 C H sing 1.09 N N
25 C4A H7 C H sing 1.09 N N
26 C4A H8 C H sing 1.09 N N
27 O3 H9 O H sing 0.97 N N
28 C2A H10 C H sing 1.09 N N
29 C2A H11 C H sing 1.09 N N
30 C1 H12 C H sing 1.09 N N
31 C1 H13 C H sing 1.09 N N
32 C8 H14 C H sing 1.05 N N