Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : ERJ    

Bonds between two atoms of the molecule

Total Number of Bonds: 40


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O5' C5' O C sing 1.43 N N
2 C5' C4' C C sing 1.53 N N
3 C4' C3' C C sing 1.54 N N
4 C4' O4' C O sing 1.44 N N
5 O3' C3' O C sing 1.43 N N
6 C3' C2' C C sing 1.55 N N
7 O4' C1' O C sing 1.44 N N
8 C2' C1' C C sing 1.55 N N
9 C2' O2' C O sing 1.43 N N
10 C1' N9 C N sing 1.47 N N
11 N9 C8 N C sing 1.36 N Y
12 N9 C4 N C sing 1.37 N Y
13 C8 N7 C N doub 1.3 N Y
14 C4 N3 C N doub 1.33 N Y
15 C4 C5 C C sing 1.41 N Y
16 N3 C2 N C sing 1.32 N Y
17 N7 C5 N C sing 1.35 N Y
18 C5 C6 C C doub 1.41 N Y
19 C2 N1 C N doub 1.32 N Y
20 C6 N1 C N sing 1.33 N Y
21 C6 C19 C C sing 1.48 N N
22 C19 C23 C C sing 1.4 N Y
23 C19 C20 C C doub 1.35 N Y
24 C23 C22 C C doub 1.33 N Y
25 C20 S21 C S sing 1.71 N Y
26 C22 S21 C S sing 1.76 N Y
27 C8 H1 C H sing 1.08 N N
28 C20 H2 C H sing 1.08 N N
29 C22 H3 C H sing 1.08 N N
30 C1' H4 C H sing 1.09 N N
31 C2 H5 C H sing 1.08 N N
32 C2' H6 C H sing 1.09 N N
33 C23 H7 C H sing 1.08 N N
34 C3' H8 C H sing 1.09 N N
35 C4' H9 C H sing 1.09 N N
36 C5' H10 C H sing 1.09 N N
37 C5' H11 C H sing 1.09 N N
38 O2' H12 O H sing 0.97 N N
39 O3' H13 O H sing 0.97 N N
40 O5' H14 O H sing 0.97 N N