Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : ET9    

Bonds between two atoms of the molecule

Total Number of Bonds: 52


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O6 C6 O C doub 1.22 N N
2 C6 C5 C C sing 1.47 N N
3 C6 N1 C N sing 1.34 N N
4 N7 C5 N C sing 1.35 N Y
5 N7 C8 N C doub 1.3 N Y
6 C5 C4 C C doub 1.39 N Y
7 N1 C2 N C doub 1.32 N N
8 C44 C6' C C doub 1.31 N N
9 C8 N9 C N sing 1.36 N Y
10 C4 N9 C N sing 1.36 N Y
11 C4 N3 C N sing 1.37 N N
12 C2 N3 C N sing 1.36 N N
13 C2 N2 C N sing 1.37 N N
14 N9 C1' N C sing 1.46 N N
15 C6' C1' C C sing 1.52 N N
16 C6' C4' C C sing 1.51 N N
17 C1' C2' C C sing 1.55 N N
18 O2A PA O P doub 1.48 N N
19 O5' C5' O C sing 1.43 N N
20 O5' PA O P sing 1.61 N N
21 C5' C4' C C sing 1.53 N N
22 PA O1A P O sing 1.61 N N
23 PA O3A P O sing 1.61 N N
24 C4' C3' C C sing 1.54 N N
25 C2' C3' C C sing 1.55 N N
26 C3' O3' C O sing 1.43 N N
27 O3A PB O P sing 1.61 N N
28 O1B PB O P doub 1.48 N N
29 PB O2B P O sing 1.61 N N
30 PB O3B P O sing 1.61 N N
31 O3G PG O P doub 1.48 N N
32 O1G PG O P sing 1.61 N N
33 O3B PG O P sing 1.61 N N
34 PG O2G P O sing 1.61 N N
35 C1' H1 C H sing 1.09 N N
36 C2' H2 C H sing 1.09 N N
37 C2' H3 C H sing 1.09 N N
38 C3' H4 C H sing 1.09 N N
39 C4' H5 C H sing 1.09 N N
40 C44 H6 C H sing 1.08 N N
41 C44 H7 C H sing 1.08 N N
42 C5' H8 C H sing 1.09 N N
43 C5' H9 C H sing 1.09 N N
44 C8 H10 C H sing 1.08 N N
45 N2 H11 N H sing 0.97 N N
46 N2 H12 N H sing 0.97 N N
47 N3 H13 N H sing 0.97 N N
48 O1A H14 O H sing 0.97 N N
49 O1G H15 O H sing 0.97 N N
50 O2B H16 O H sing 0.97 N N
51 O2G H17 O H sing 0.97 N N
52 O3' H18 O H sing 0.97 N N